Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22927911|gb|BU545050.1|BU545050EST: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTANNATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|17518817|gb|BM187859.1|BM187859EST: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|151411072|gb|EV280883.1|EV280883EST: GATGGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: GATGG-AGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|22540826|gb|BU090669.1|BU090669EST: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|10234013|gb|BE802901.1|BE802901EST: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAG GAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
EST:
gi|192309322|gb|FK000530.1|FK000530EST: AGATGGAGAAAGTACG-TCAAAA-GCTGTGAAAA-CAGCCCCTTTCC-AG GAGCTACTATCGTTGCAC-AGTGTTTCATGTA-TGTGAAGAAACGTGTGGA
genomic: AGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatact ... tatattatagGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGgtactatactaacacttttattcttcaatcaatacacgcaaaactttgcttgcttgttccctttttcactttcggttcgattaaaatttagattttagaccaaccaaaaaataaatgcattgtaaatatcagaaacactattaacatttgaatcgtgtgcatatattatag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG