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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCGACAGATTATCTTCTCAAAGCTACTGCACATCCAGACATCATTTATGTTCAGgttagtcttctcttctcttccttatagtttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcag

Basic information

species Glycine max
transcript GLYMA03G37420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTCATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCGACAGATTATCTTCTCAAAGCTACTGCACATCCAGACATCATTTATGTTCAGgtt----agtcttctct------tctcttccttatagtttcattcctttttgttatattcattcatgttactattgagtgtggtttttgcag
  ||||||||  |||||| |  || || | ||| || ||||||||||| || || | ||| |||||||| ||| ||||||| || | ||||||||||||||||    | | | ||||      |||| ||   | |     |      ||||  | |   | |  | |||   || || ||| |  | |   
TCTCATGAAATCTGAGTTACCAAACGCAAAAGACGCTATTCGTTGGGCTACTGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGgttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttgggaaacagagtggt-ttaacgtt-agcgtgttcatag---

upper sequence: GLYMA03G37420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 2
GGTCATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCGACAGATTATCTTCTCAAAGCTACTGCACATCCAGACATCATTTATGTTCAGgtta-gtcttctcttc-----tcttccttatagtttcattcctttttgttatattcattcatgtt----actattgag----tgtggtttttgcag-------------
| | |||||||||||||||||| |||||| ||| |||||||||||||| || ||||| || |||||||| ||||  |||||||||| |||||| |||||||||  || || |||||     ||| | |     |||||   |  ||   || |||   | |   |    | |   |||    || ||||||  | |             
GTTGATGAAAGGTGAGTTGCAGCATGCCAAAGAAGCCATTCGTTGGGCCACTGATTACCTCCTCAAAGCCACTGTCCATCCAGACACCATTTACGTTCAGgttttgtgttttcttcagatctctgcttctctatttcagagcagttacctacatttgattagagtcgaaaatgcagaggagctgaggttttaacggggtttttctgcag