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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacag

Basic information

species Glycine max
transcript GLYMA03G37170.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 2
CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcacttttcattctcttctcttttatttctaacttattattattatgatggtgatggtgatgttgatgatgatgtaacag-----------------
||||||||||| || ||||||||||| ||||| |||||||||| ||     | ||   ||| |  | || |  || |||||| |   |   |   ||   |   |||  |  |   |||| |                      
CTTCCTCTTTCTCTGCTCAAGACTGCTCAAGGTCACCCTATGgtaagg-gttgtttcctctgtgttattgtcgttataactt-tagctgcaactgtgaataacatgagttgaacactgattttttccctttttttcagaaacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541271|gb|BU091114.1|BU091114
EST:     ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: ACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|11689790|gb|BF597466.1|BF597466
EST:     GCTTACTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACCGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: GCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|192311359|gb|FK003802.1|FK003802
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
EST: gi|192311360|gb|FK003803.1|FK003803
EST:     CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG                         TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC
genomic: CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGgcaactcact ... gatgtaacagTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGC