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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCGAGCCGTTGTCATCGGAAACGGCTTCGCCGGCGCTGAGAATCAGTGCATTGGTTTGGTCCGTGCTCTCGGTTTCTCCAACCGCCACTCCTTATATgtaagcatttcttctttattcttcgtttatttataaataaacaaatagctattgaattgaatcgaatggaatgattggttatag

Basic information

species Glycine max
transcript GLYMA03G35630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35630.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G06180.2 (Arabidopsis thaliana), 5'ss of exon 1
TCGGCGAGCCGTTGTCATCGGAAACGGCTTCGCCGGCGCTGAGAATCAGTGCATTGGTTTGGTCCGTGCTCTCGGTTTCTCCAACCGCCACTCCTTATATgtaagcatttctt----ctttattcttcgttta-tttataaataaacaaatagctattgaattgaatcgaatggaatgattggttatag
    ||||| ||| | ||||||||||||| ||||||||| |||||||| ||||| ||| |  | ||  |  | ||  ||| | | ||||||  ||  ||||||| |      |    |  ||||| || | |   || |  ||   |||   | |  ||| ||   |    |    || |  |      
GAAACGAGCAGTTCTGATCGGAAACGGCTGCGCCGGCGCGGAGAATCAATGCATCGGTCTCCTTCGATCCTTAGGCCTCTTCGATCGCCACCTCTATTATgtaatctccgtctaaaacactattcctcttctggcttcttcattttcaa--tgtttctgagtttgttt---tttcctgttcag------

upper sequence: GLYMA03G35630.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g02890.t01 (Vitis vinifera), 5'ss of exon 1
TCGGCGAGCCGTTGTCATCGGAAACGGCTTCGCCGGCGCTGAGAATCAGTGCATTGGTTTGGTCCGTGCTCTCGGTTTCTCCAACCGCCACTCCTTATATgtaagcatttcttctttattcttcgtttatttataaataaacaaatagc--tattgaattgaatcgaatggaatgattggtt-atag--------------
  | |||||  |||| ||||||||||||||||| ||| | ||||||||| ||||||| ||||| |||||| | ||  ||||||| | ||| ||||||| ||| || | | || |  |  | | | || |||| |  ||       |  |  |||| | ||| ||         |  ||  || ||                
CAGACGAGCAATTGTAATCGGAAACGGCTTCGCAGGCTCAGAGAATCAGAGCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTTgtgagtaatactgcagtgct-tgcattgatttgtctatgttatgttttcaatatttatttgtattctgcactgttgttcattcattttttggcaagctttt