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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccatttaccttcatgcctttattttgatatgcttattattgtatatgatgaatcctttagattgtgaagttatgaaat...

Basic information

species Glycine max
transcript GLYMA03G34910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 1
TCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccatttaccttca-tgcctttattttgatatgcttattattgtatatgatgaatcctttagat-tgtgaagttatgaaat
 ||||||||||| || |||||| | || ||||| |||||||| ||||| |||||||| ||| ||||||| || ||||| |||| | |||| || ||||||||  | |  |  || |   ||  |||     |  | ||  ||| |  |   |   | ||   ||   || |       ||||  | | |||||         
ACCAAGTGATCAGAAGCTGCCAACACTGTACCTGTTAGACAGCATTGTGAAGAACATCGGAAGGGATTACATTAAGTACTTTGGTGCCAGGCTGCCTGAGgtttggtgct--ttgttgatagtcatggttatagaatgtttttttcctagcaaattcatctctg---atcaccctctttttacttctctgaag---------

upper sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
TCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccatttaccttcatgcctttattttgatatgcttattattgtatatgatgaatcctttagattgtgaagttatga--aat
||| ||||| ||||| ||||||||||| || || ||||| || ||||| ||||| |||||| | |||||||| || ||||||||| ||||||| |||||||| |||  ||||||  | |      | ||   | |      | | |   |||| | | || || ||||  |      ||   ||| ||   |   ||  | |
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttatt-ccatgtgtggtctataattac-ttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt