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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACACCGACTGCATCTTCTTCTTCATTATCGCAGAGGCCTTCGTCTCATGTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttttcatcgtttattcgcttttcatggttttagttgtatctgatttgtaaatggaaaatagttaggaagggtgctgttagtcgtacaattagtactttctacttactctgatgttgtgaaatgtgaattgttcaaattttccaaatatgccgatcttagttattttttctgctctttataaattgcag

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|213610992|gb|DB970919.1|DB970919
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|10848192|gb|BF070735.1|BF070735
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTCTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|5678132|gb|AI939262.1|AI939262
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|298167079|gb|HO010518.1|HO010518
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|254348136|gb|GR851815.1|GR851815
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAG                         TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT
genomic: GTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttt ... taaattgcagTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTACACCGACTGCATCTTCTTCTTCATTATCGCAGAGGCCTTCGTCTCATGTTCCACCTTCCGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGgtttgagttttcatcgtttattcgcttttcatggttttagttgtatctgatttgtaaatggaaaatagttaggaagggtgctgttagtcgtacaattagtactttctacttactctgatgttgtgaaatgtgaattgttcaaattttccaaatatgccgatcttagttattttttctgctctttataaattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG