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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTGTGGGATGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGCGGTCACCGCGATCAGgttcgtttgaatttgaactcaagttgttagtgctatatttaattaatgtggtttcgttctatggtaggtgtattttatttttatctttgggttaggtcat...

Basic information

species Glycine max
transcript GLYMA03G34360.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTGTGGGATGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGCGGTCACCGCGATCAGgttc--gtttgaa--tttgaactcaagttgttagtgct--atatttaattaatgtggtttc-gttctatggtaggtgtattttatttttatctttgggttaggtcat-----------------------
||| || || || || |||||||||||||||||||||||||| || |||||||| ||||||||||| || || ||||||||||| || || || || ||||||    |||||   ||   | ||||| | |||    |  |||| ||  || || | || | | |   || |  || |||  ||| |  || |   ||| || || |                       
TGGATCTTTACTTGCTTCTGGTAGCAAGGATAATGATGTTATCTTATGGGATGTTGTTGGCGAGACAGGCCTTTTTCGCCTTCGTGGCCATCGTGACCAGgtttttatttgagatttcccaatcaagatcttaaattttgatatatatatattgagcttgctgcttcttgttttgtttataatatctaaatgt---ggtgagttcctattgtttgttttacatgttgtag

upper sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15498 (Selaginella moellendorffii), 5'ss of exon 2
TGGCTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTGTGGGATGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGCGGTCACCGCGATCAGgt---tcgtttgaatttgaactcaagttgttagtgctatatttaattaatgtggtttcgttctatggtaggtgtattttatttttatctttgggttaggtcat
|||||||||||| ||| |||| ||||| || | ||| |||||| ||||||||  ||| |||||||||||  | ||||| ||||  |||||| | || |||||   ||  | | | ||  | |||  |  ||  | || |   |  |  | ||| |||  ||| |                                       
TGGCTCCTTGCTTGCCACTGGAAGCAAAGACACTGACGTTATTGTGTGGGATACGGTAGGCGAGACTGGGTTGTTTCGTCTTCAAGGTCACAGAGACCAGgtaagtcactcgtagtttcattcat-tcattctttctgttcct--tagacgtgattttcttccag--------------------------------------