1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatctttacctctaagtgttttttttaattaatattattcttaaaatgaaatgtttatttctggtgattgagtacttgagtttttttttttttct...
species | Glycine max |
transcript | GLYMA03G34300.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|209724178|gb|BW659712.1|BW659712
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|20813031|gb|BQ297509.1|BQ297509
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|4314103|gb|AI461222.1|AI461222
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|20449041|gb|BQ253165.1|BQ253165
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|15204096|gb|BI426864.1|BI426864
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|10233567|gb|BE802455.1|BE802455
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|20449080|gb|BQ253204.1|BQ253204
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|9204176|gb|BE330400.1|BE330400
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|120530487|gb|EH258620.1|EH258620
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|9563997|gb|BE473506.1|BE473506
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|209715618|gb|BW657385.1|BW657385
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCAEST: gi|17964485|gb|BM271219.1|BM271219
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
EST: TTCTTTGTTGGTGGCAACTGGAAGTGT AACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
genomic: TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCAATCAGCAAGCTTGTTGCTGACTTGAACAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTTGTTGGTGGCAACTGGAAGTGTgtaagtatctttacctctaagtgttttttttaattaatattattcttaaaatgaaatgtttatttctggtgattgagtacttgagtttttttttttttct
- - - - TGGTGG
- - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa