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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGCTTCACCTTGCGCCGgtgagtttctgttttctctgctttcacttcacactcgcacgtcgtcgtttcacttgcgttttcgtgtcggatttgttctggttccgttcgtgagcccgat...

Basic information

species Glycine max
transcript GLYMA03G33000.6
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404690|gb|EV274504.1|EV274504
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|298199436|gb|HO042799.1|HO042799
EST:     AAGACGAGCTTCACCTTGCGCTGAAG                         GGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
genomic: AAGACGAGCTTCACCTTGCGC---CGgtgagtttct ... gtttcagaagGGCCACAGATGGTTGAAACCGATATGGATGCCGAAACT
EST: gi|7925031|gb|AW831057.1|AW831057
EST:     AGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|8827754|gb|BE211484.1|BE211484
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|27446381|gb|CA953504.1|CA953504
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|192324459|gb|FK015810.1|FK015810
EST:     AGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|5510301|gb|AI856743.1|AI856743
EST:     GCTTCACCTTGCGCCGAAG                       
genomic: GCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|193656797|gb|FK606713.1|FK606713
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga
EST: gi|9986811|gb|BE660919.1|BE660919
EST:     AAGACGAGCTTCACCTTGCGCCGAAG                       
genomic: AAGACGAGCTTCACCTTGCGCC---Ggtgagtttct ... gtttcaga

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAGCTTCACCTTGCGCCGgtgagtttctgttttctctgctttcacttcacactcgcacgtcgtcgtttcacttgcgttttcgtgtcggatttgttctggttccgttcgtgagcccgat

- GAGCTT