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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAAAAAGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGACGATTTTGAGTTACTAACTATGATTGGAAAAGGTGCATTTGGGGAGgtacgtatgtgtctattaactatttgttctttcaattttaaaatctttttatgtctttgcccattaatagttccacttaacatacaattttaaattgttttag

Basic information

species Glycine max
transcript GLYMA03G32160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32160.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 2
AGAGAAAAAAGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGACGATTTTGAGTTACTAACTATGATTGGAAAAGGTGCATTTGGGGAGgtacgtatgtgtctattaactatttgttctttcaattttaaaatctttttatgtctttgcccattaatagttccacttaacatacaattttaaattgttttag
 ||||| ||||| || || ||||||||| | || |||||||||||| ||||||| ||||||||  |  | || ||||| || ||||| |||||||| ||||||            | |||||||  | |   || |   ||||||| |||      |   ||| |     ||| | ||     |  |||||   ||  | |||
TGAGAAGAAAGAGACAGAGTATATGCGTATGCAGAGGCACAAAATGAGTGTTGATGATTTTGATCTTTTGACAATGATAGGGAAAGGAGCATTTGGTGAGgtaaac---------taaactattcatgcaaaca-tggaaaaatctcttt----tgtgatccactt----ttctagttgctgcaatatttt---ttcctctag

upper sequence: GLYMA03G32160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 2
AGAGAAAAAAGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGACGATTTTGAGTTACTAACTATGATTGGAAAAGGTGCATTTGGGGAGgtacgtatgtgtctattaactat-ttgttctttcaattttaaaatctttttatgtctttgcccattaatagttccacttaacatacaattttaaattgttttag--
 ||||| || ||||||||||| ||||| ||||||||||| || ||||||| ||| |||||||| ||| | || ||||| || || || |||||||| ||||||   || | | |   || |||  || ||| |   |||  |||| | || || ||||    | ||   | ||    | ||  | ||   | |   |  | |||  
GGAGAAGAAGGAAACTGAATACATGCGCCTTCAAAGGCATAAGATGGGTGCTGATGATTTTGAATTATTGACGATGATCGGGAAGGGAGCATTTGGAGAGgtatacatttatgtga-aattatactggtctctt--tttccaaatttcttaat-tcttaattcttttccatttggtttcaagcttcataatcatgct--tctagct