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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttacacacaccctttttttctaacccaactttttccatatgcttgctgtaaaaatccaatctttctttctttttatccttttattgcttttgggttagctgattaactctttgggtgcaaattgcag

Basic information

species Glycine max
transcript GLYMA03G30800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192383|gb|HO036465.1|HO036465
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         CGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|213611742|gb|DB958864.1|DB958864
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298165676|gb|HO008647.1|HO008647
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298175980|gb|HO015385.1|HO015385
EST:     AGCATCTGCAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCCTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|16345172|gb|BI970767.1|BI970767
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298194623|gb|HO043095.1|HO043095
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCGTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|193553968|gb|FK512509.1|FK512509
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|8282815|gb|BE020376.1|BE020376
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298178511|gb|HO024246.1|HO024246
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|298181386|gb|HO022825.1|HO022825
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|23734566|gb|BU765519.1|BU765519
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|18039234|gb|BM307528.1|BM307528
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|57574515|gb|CX547490.1|CX547490
EST:     AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
EST: gi|17400959|gb|BM177741.1|BM177741
EST:     AGCATCTACATTGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATG                         TGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA
genomic: AGCATCTACAAAGGGAAGGTTCTTCTTGTAGTAAATGTCGCTTCAAAATGgtatttttac ... caaattgcagTGGATTTACGAATACCAATTACACCCAGTTAACTGAGCTTTACAGCAAATA