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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgcttgcaatttcttattatgggggtctttgtgtgttagataaactttttcttgagatgcatgctgcacacatgaaatagatataggcatacgg...

Basic information

species Glycine max
transcript GLYMA03G30250.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682899|gb|FK625047.1|FK625047
EST:     TACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGT
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGT
EST: gi|18733465|gb|BM527622.1|BM527622
EST:     TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|13791160|gb|BG653751.1|BG653751
EST:     TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
EST: gi|151404649|gb|EV274463.1|EV274463
EST:     CTTGGATGCCCCGTTTTGCAAGAATTTGATGTATCCCCCAATTTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTTGTAAAGTTGAAGTCCATA
genomic: CTTGGATGCCCCG-TTTGCAAGAATTTGATGTATCCCCCAA-TTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCA-TTGTAAAGTTGAAGTCCATA
EST: gi|9205254|gb|BE331478.1|BE331478
EST:     TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAG                         TGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT
genomic: TACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgct ... tgttttccagTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGgtgcagtgcttgcaatttcttattatgggggtctttgtgtgttagataaactttttcttgagatgcatgctgcacacatgaaatagatataggcatacgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataga