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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGgttaactattaattttttttttatatctttcttccatctccttttgtttttccaagctagttactcttttttttttaaaaaaggtggcaattgatgctaatatatgcgctttaaaacgttgtgcacag

Basic information

species Glycine max
transcript GLYMA03G29820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 5
CGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGgttaactattaattttttttttatatctttcttccatctccttttgtttttccaagctagttactcttttttttttaaaaaaggtggcaattgatgctaatatatgcgctttaaaacgttgtgcacag-----
|| || || || |||||||||||||| || ||||| || || |||||||| ||||| ||||| ||||||||   |  ||| || | |   |   | |      ||  | ||||   |    | |  |   |  ||||      |   ||  | |     ||  | ||        | ||||      ||   | |       
CGCGAAGGAAACCGCAAAGGTCCAACATCGAGTTCAGAGCAGGAAGGACCCAAAACGCCAGACCCTAAGgt-ggcggttacttgtctagctccgtttccacagcaatttctttacatccatctatttgcatcttcttcaacaatgttaagtgcttttctttctttctttctctctctctttttttttttcccctctaagtag