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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag

Basic information

species Glycine max
transcript GLYMA03G27620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   |  | || ||   |||||||||| |||||||||     | |   | | || |      || |  ||| |||| | ||  | |  | |    |||  |     ||||     | |  |    || ||  | | ||    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAGgtttgtggtgtagcaatctactcaagtgct-tgaatttaaca-tctacttctgcactt---aatgcat----tttacatcctaaggccatcttgcataaaacttggaat--

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01290.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattt--tattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
 || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| |  | ||||| |||||||||||||||||||||| ||||  ||  ||||   || |  |      ||| |  |   || || || | ||  |     ||   || |  |||   | |   | | |   | || | ||       
CTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAAgttc-ttgaatttaacatctactttacacttaatgtattttacatattaagatcttcttgcatggaatttggaatttgtcacattgactcaaaacagagtt-------

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||||||||||||||     | |  |  | || |      || |  |||  ||| | ||  | |  | |    |||  |   | ||  ||| | |  |||   || ||  | | ||    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgtgctgtagtcatctactcaagtgct-tgaatttcaca-tctacttctgcactt---aatgca---ttttacatcctagggtctt-cttacataaaacttggaat--

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | |||||   ||||||||||||||||||||     | |  |  | || |      || |  |||  ||| | ||  | |  | |    |||  |   | ||  ||| | |  |||   || ||  | | ||    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgtgctgtagtcatctactcaagtgct-tgaatttcaca-tctacttctgcactt---aatgca---ttttacatcctagggtctt-cttacataaaacttggaat--

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   |||||| |||||||||||||     | |  |  | || |      ||     ||||   || ||  | |  |  ||  ||| ||   | ||| || | | |       || ||  | | ||    |  
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAGgtttgtgctgtagtcatctactcaagtgcttgaatttcag--atctacttctgcac-gt--aatgta---tttttcat-actaaggtcttcttgcataaaacttggaat--

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 5
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag
 || ||||  ||||||| ||||  |||||||||||||||||||||||||||||| |  | ||||| |||||||||||||||||||||| |   ||| |      | |       |||| | |  |  || ||  ||  | ||  || || |   || || |   ||    |  |||         ||||       
CTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAGgtttatgctatgtccaccaactcaa--gttcttgaatttaacatctactttgcacttaatgtattttacatattaag--atcttcttgcatggaatttggaatt-------

upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 8
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattt-----------tgtcactctttattcaacaatatatg---tttaaattgttgaatatacgatgtttaatcattgaatc--tcattttcaccataattattgtag--------------------------------------
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||| ||||||||||     | |  |  | || |            | ||||   |  |||  || |  |||   |||| ||  | |  | | |     | || | | ||||   |||     ||   || | ||  ||                                      
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAGgtttgtggtgtagtcatctactcaagtgcttgaatttcacatctagttctgcacttgatgcattttacatcctagggtcttcttacataaaacttggaattggtcacacggactcgaaatgtttaagccaaaagctgtgtaacttcagccttatacaattataag