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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt...

Basic information

species Glycine max
transcript GLYMA03G27180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g08070.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttg----tggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt
||||||||||||||||||||||||| ||||| || ||| |||| |||||| ||||| ||||||||||   |   ||||| ||||||||||| |||||||||||      | |  |||         || |  ||   |||     || ||  ||    ||   ||| ||  | |||     | |      ||||| |  ||   
AGCACTACCACCGCCGCCACAAGGTCTGCGACTTCCACGCCAAGGCCGCCGCCGTCCTCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAGTGCAGCAGgttagctccgatcccgcgcaaccatgtcgctgccag-gtgggacccagcaggcac-acgtgtcgctgccaggtgggacccagggcacagccacacacgcact--

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g44860.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgc-atcaatcattgagttcagctccctcgggggcatttgcgtcttttcac-actcctacctt
||||||||||||||||||||||||| |||||||  ||| |||| ||| ||  ||||  |||| ||||   |   ||||| ||||||||||||||||||||||   | |   |||         ||   |    | |  | || || | ||  ||   |  |||  || |    | ||  |      | ||   ||      |
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCGCCTCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtaa-gctactgctccgccatcaccgtgctacagcgtgtcgccatgattcgctgtactt-gctttcttgaattctttctctcgccatgaccggtctcgggat

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g56170.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGC---CGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttg-------tggtggcgcttgttttgttccccaccgtcgtgaattgc--atcaatcattgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt
    ||||||||||||||||||||||||||||   |||||||| ||   || |  ||||| ||||| |||  |    ||| ||||||||||||| ||||||||||         | || | | ||  |||| | | |    ||   | |  |  ||| |   || | |  |  ||||    | | ||    | |   |   | |        
---GCTACCACCGCCGCCACAAGGTGTGCGAGCACCACTCCAAGGCGCCCGTCGTCGTCACCGCCGGCGGCCTCCACCAGAGATTCTGCCAGCAGTGCAGCAGgtcagtgttcatcgtcgtgtttagtttgctgctcgaattcactattctccgatccactgttca-tcgatttcccagaagaggatgctggcccgatttaatt--------

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G168229_T02 (Zea mays), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcgggggcatttg-cgtcttttcacactcc-tacctt
||||||||||||||||||||||||| |||||||| ||| |||| |||  | |||||  |||||||||   |   ||||| ||||||||||||||||||||||   ||    |        | | |   |     | |    || |  || |||   ||   | |       | |  || ||  ||  ||     | || | |
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggcactgtcgaca--gctactagctcagctcagacacacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G111136_T01 (Zea mays), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgt-tgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcggg-ggcatttgcgtcttttcacactcctacctt
||||||||||||||||||||||||| |||||||  ||| |||| |||  | |||||  |||||||||   |   ||||| ||||||||||| ||||||||||  ||     ||   || |   ||||  || |       |||||  ||   ||       ||   || || |||      |||    |||   || ||   
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgtacgtacgtacgtacgtgtccctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtcaagacacgtgcccact--

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G101499_T01 (Zea mays), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatca--ttgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt
||||||||||||||||||||||||| |||||||  ||| |||| ||| ||  ||||  | ||| |||   |   ||||| ||||||||||||||||||||||      |  || |   | |   | |  |||| |   | ||   |   |  | | || |         |     |       |   | ||     || |  
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCTCCGTCGTCGCCACCGGCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgtacgttgcctagctagccgcgcgtcgtc-tctctcgctctacctagctagcgtgcgaagaagctgaaaaaaggcatagcacgt-acggaagtatcag

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G058588_T01 (Zea mays), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGG---TTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaat--tgcatcaatcattgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt
    |||||||||||||||||||||||||||    |||||||| ||  |   |||| || |||||||     ||   ||| | ||||||||||| ||||||||||   |    | || | | ||   ||     || |  |   ||||     |||  | | ||  || || |  | ||    |      |  |  | |      
---GCTACCACCGCCGCCACAAGGTGTGCGACCACCACTCCAAGGCGCCGGTCGTCGTCACCGCCGGAGGCATGCACCAGAGGTTCTGCCAGCAGTGCAGCAGgtca-gtcatcactggatgtggatccacaattcatcgacgatgcagtgcacatcca-tccatatctctggtagccacgaccagaagctacctttacggttgg

upper sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0021g02300.t01 (Vitis vinifera), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcgggggcatttgcgtcttttcacactcctacctt--
|||| |||||||||||||||||||| |||||||| |||||||||||| | || ||| |||||||||||||||||||||| |||||||| ||||| |||||||| | |                ||  |    |    |      ||   ||| | |  |              ||   ||       | | ||  | |    
AGCATTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCTACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaaattaccaaaacacccttattcacaacgaaacttccagctatttaatctaataaaa--aataaaatcaacgcaaaccaaaattcaaagcaagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193390480|gb|FK356428.1|FK356428
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|208245342|gb|GE041666.1|GE041666
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193541036|gb|FK497808.1|FK497808
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193707561|gb|FK646783.1|FK646783
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAA-CGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193632901|gb|FK581071.1|FK581071
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|207799002|gb|GD770997.1|GD770997
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCA
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCA
EST: gi|193445828|gb|FK414949.1|FK414949
EST:     ACCGTCATCGGCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|7147172|gb|AW509094.1|AW509094
EST:     CTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: CTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193622781|gb|FK571513.1|FK571513
EST:     GCCGGGTTGACTCAGCGTATTTCTTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: GCCGGGTTGACTCAGCG-A-TTC-TGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193435228|gb|FK404110.1|FK404110
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTAGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGA
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCT-GAGTTTGATAACGGAAAACGTAGCTGCAGGAAGA
EST: gi|193559677|gb|FK515008.1|FK515008
EST:     GCCGGGTGGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: GCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|8284876|gb|BE022435.1|BE022435
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193682540|gb|FK621678.1|FK621678
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|208249392|gb|GE046807.1|GE046807
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|208275228|gb|GE068048.1|GE068048
EST:     CCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: CCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193356910|gb|FK322276.1|FK322276
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTTCTGAGTTTTGATAACGGAAAACGTAGCTGCAGGAAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTT-CTGAGTTT-GATAACGGAAAACGTAGCTGCAGGAAG
EST: gi|8285524|gb|BE023083.1|BE023083
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|208282388|gb|GE075110.1|GE075110
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193708406|gb|FK645428.1|FK645428
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193404039|gb|FK367731.1|FK367731
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|10236075|gb|BE805023.1|BE805023
EST:     CCGTTATTCCCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: CCGTCA-TCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193465461|gb|FK432436.1|FK432436
EST:     CGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGACAACGGAAAACGTAGCTGCAGGAAGAG
genomic: CGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
EST: gi|193672063|gb|FK614653.1|FK614653
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCTGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAG
EST: gi|193382542|gb|FK345795.1|FK345795
EST:     ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAG                         GTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG
genomic: ACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtgg ... tgacgtgcagGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAG