Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCAGAGGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttctgttcttttcttcgaatttgttttagttttagcctacaccaccccactaattcccttttcatttcccatgttttaaatttcaaaatgttcgattttttttgcttttaagttttgatgatttttgcatgcag

Basic information

species Glycine max
transcript GLYMA03G24900.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845565|gb|BF068659.1|BF068659
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|192294066|gb|FG986155.1|FG986155
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|31476115|gb|CD418143.1|CD418143
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|5606787|gb|AI900885.1|AI900885
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACANAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7686270|gb|AW756981.1|AW756981
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7686755|gb|AW757403.1|AW757403
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|17400186|gb|BM176968.1|BM176968
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|10843596|gb|BF066873.1|BF066873
EST:     CGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCACGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|192315853|gb|FK008563.1|FK008563
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7693394|gb|AW761487.1|AW761487
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7145824|gb|AW507746.1|AW507746
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|31460082|gb|CD402110.1|CD402110
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7042477|gb|AW472371.1|AW472371
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|209701011|gb|BW652149.1|BW652149
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|192303389|gb|FG995655.1|FG995655
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTCGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|6916165|gb|AW397695.1|AW397695
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7326438|gb|AW620247.1|AW620247
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|151396709|gb|EV266582.1|EV266582
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|31561223|gb|CD487061.1|CD487061
EST:     GCTCTCTGAAGATTCATGCAATTACCAAGGGAGAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GCTCTCTGAAGATTCATGCAATTACCAA---AAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|15199348|gb|BI423786.1|BI423786
EST:     ACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: ACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|31311182|gb|CD396385.1|CD396385
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|31311105|gb|CD396308.1|CD396308
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|6481892|gb|AW201163.1|AW201163
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|12691412|gb|BG157748.1|BG157748
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|298178828|gb|HO024563.1|HO024563
EST:     GGAGCTCTCTGAAGATCCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|209701010|gb|BW652148.1|BW652148
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|151399965|gb|EV269836.1|EV269836
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7686677|gb|AW757255.1|AW757255
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|120533326|gb|EH261459.1|EH261459
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|7233244|gb|AW568592.1|AW568592
EST:     CATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: CATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|15284812|gb|BI468703.1|BI468703
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|9440031|gb|BE440542.1|BE440542
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|151402094|gb|EV271907.1|EV271907
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|15204003|gb|BI426780.1|BI426780
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|13787378|gb|BG649970.1|BG649970
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
EST: gi|6482982|gb|AW202121.1|AW202121
EST:     GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAG                         GTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT
genomic: GGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttct ... ttgcatgcagGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAGGAGCTTTCAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGCAGAGGAGCTCTCTGAAGATTCATGCAATTACCAAAAAATGGGAACCCACAAAGgtttttttctgttcttttcttcgaatttgttttagttttagcctacaccaccccactaattcccttttcatttcccatgttttaaatttcaaaatgttcgattttttttgcttttaagttttgatgatttttgcatgcag

- - - -  GGAGCT
- - - - - - - -  CTGAAG
- - - - - - - - - TGAAGA