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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACAGCTTTTTCCATGACAGAACGAGATCGTCTTGATCTACGAGGACTGCTTCCTCCAAATGTTATGTCTCCTGACCTACAGATTGAACGATTCAgtatgttttaatattttccctggtctcaggccaatgttgaacatatcaaatcagtgttgttgggcttggtagtaattttatttttgtataatggtgttgg...

Basic information

species Glycine max
transcript GLYMA03G24630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0021g00500.t01 (Vitis vinifera), 5'ss of exon 2
GGGACAGCTTTTTCCATGACAGAACGAGATCGTCTTGATCTACGAGGACTGCTTCCTCCAAATGTTATGTCTCCTGACCTACAGATTGAACGATTCAgtatgtttta-atattttccctggtctcaggccaatgttgaacatatcaaatcagtgttgttgggcttggtagta----attttatttttgtataatggtgttgg-
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GGAACGGCATTCTCCATGACCGAACGAGATCGTCTTGATCTTCGTGGACTTCTCCCGCCAACAGTTATGTCCCCTGAAATGCAAATTGAACGCTTCAgtgagttctctgtctttctccccctctcaaacacacat-----atactaactcagtac-atatggcttggcagcattcagttttttcttcacatgaagaggcaata