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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATACCAATGCCTCAAGTTCTAATTTAAAATCCAAGGGATTACATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACAgttgagtagctcaaacttttttacctagtgctcttcttttactgtttcggttcctttaatagtatgtggttttatgcacag

Basic information

species Glycine max
transcript GLYMA03G22790.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183719|gb|HO028932.1|HO028932
EST:     CATAGCAGCATTTTTGGTACTTCGATTCGATGTGACTCCTTAGTCTTACA                         AAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT
genomic: CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACAgttgagtagc ... ttatgcacagAAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT
EST: gi|192322626|gb|FK014363.1|FK014363
EST:     CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACA                         AAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT
genomic: CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACAgttgagtagc ... ttatgcacagAAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT
EST: gi|208212945|gb|GE012298.1|GE012298
EST:     CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACA                         AAATTGCAATGGTCGTGGGATCCAGCCTATTAAA
genomic: CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACAgttgagtagc ... ttatgcacagAAATTGCAATGGTCGTGGGATCCAGCCTATTAAA
EST: gi|151407697|gb|EV277512.1|EV277512
EST:     CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACA                         AAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT
genomic: CATAGCAGCATTTTTGGTACTTCAATTCAATGTGACTCCTTAGTCTTACAgttgagtagc ... ttatgcacagAAATTGCAATGGTCGTGGGATCCAGCCTATTAAAGCCACAGCAACGGAAAT