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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatgtgtgagcgtttaattttgccgttctttgttttgtttatggttttaatttgatttattgttgtcgcatttgcgtgcaattttccggaaattcagtgatcgtgatgcgatttagaatgctttttaaatgtgtttggcttggttgtag

Basic information

species Glycine max
transcript GLYMA03G22210.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22210.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15030 (Selaginella moellendorffii), 5'ss of exon 2
GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatgtgtgagcgtttaattttgccgttctttgttttgtttatggttttaatttgatttattgttgtcgcatttgcgtgcaattttccggaaattcagtgatcgtgatgcgatttagaatgctttttaaatgtgtttggcttggttgtag
|||||||||||||||||  | ||||| || || ||||| ||||||||||||||| |||   || | |||              | ||  | ||||    |||||   ||||||  | ||    |   ||||  || | |  |                                                                                 
GCGATTACGCTGTGCCCGGACGTTCCAGTCTACTGGACCAATCGCGCGCTGTGCTATC---AGAGAAAG--------------GGgtagagtttt----ttcttctctttgttcctagtgaggaagcgatt-gttttggcag---------------------------------------------------------------------------------

upper sequence: GLYMA03G22210.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37662 (Selaginella moellendorffii), 5'ss of exon 2
GCGATTACGCTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatgtgtgagcgtttaattttgccgttctttgttttgtttatggttttaatttgatttattgttgtcgcatttgcgtgcaattttccggaaattcagtgatcgtgatgcgatttagaatgctttttaaatgtgtttggcttggttgtag
|||||||||||||||||  | ||||| || || ||||| ||||||||||||||| |||   || | |||              | ||  | ||||    |||||   ||||||| | ||    |   ||||  || | |  |                                                                                 
GCGATTACGCTGTGCCCGGACGTTCCAGTCTACTGGACCAATCGCGCGCTGTGCTATC---AGAGAAAG--------------GGgtagagtttt----ttcttctctttgtttctagtgaggaagcgatt-gttttggcag---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325145|gb|FK017531.1|FK017531
EST:     AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA                         TGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
genomic: AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatg ... ttggttgtagTGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
EST: gi|151405134|gb|EV274948.1|EV274948
EST:     AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA                         TGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
genomic: AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatg ... ttggttgtagTGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
EST: gi|27426134|gb|CA937654.1|CA937654
EST:     AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA                         TGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
genomic: AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatg ... ttggttgtagTGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
EST: gi|151408132|gb|EV277940.1|EV277940
EST:     AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAA                         TGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG
genomic: AATGTTCCGGTTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAAgtatgtaatg ... ttggttgtagTGATTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAG