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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag

Basic information

species Glycine max
transcript GLYMA03G16660.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.2 (Arabidopsis thaliana), 5'ss of exon 2
------------------------------------------ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
                                            | | ||  |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||         ||| | | || ||| |||  |   | |||   ||           ||| ||| |    |  || ||  | | ||  ||| || || || |||||
TAAATTTCCAGAGATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGT-TGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttg--------tttatcatatcaatgttatctctttctgagcattt---------ggaacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.2 (Arabidopsis thaliana), 5'ss of exon 1
-------ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttga-tttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtg----gaacag
         || |   || ||| |  | |   | ||       |  ||| ||       |  |  |  || || | ||||  |    | | |  | |  ||    |  ||  ||| ||  |  |  |||  |   |||| | || | ||  | | ||||||| ||||||  ||||     |||||
GGAAATTGATCCTACTCG-TTTGT-GTTGTTCACAGCTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACT--TTCAGgtacgaacttggttaatcatagtgagtattttggt-tagtttttg-ctgcgactaatt-tgttgtactgtgtctgaaacag

upper sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 5'ss of exon 2
-----------------------------ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
                               | | ||  |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||         ||| | | || ||| |||  |   | |||   ||           ||| ||| |    |  || ||  | | ||  ||| || || || |||||
ATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGT-TGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttg--------tttatcatatcaatgttatctctttctgagcattt---------ggaacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.1 (Arabidopsis thaliana), 5'ss of exon 2
-------ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
           |||           ||||| ||||||||||| ||||||||||||||||| || |||||      |   | || |        | | | |    ||||   ||  |||||| |   ||  |   || |||  |||||    | ||  |                      
CTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGgtacgaacttggttaatcat-------agtgagt----attttggttagtttttgct-gcgactaatttgttgtactgtgt---ctgaaacag---------------------

upper sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.1 (Arabidopsis thaliana), 5'ss of exon 2
---ATTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
     | | ||  |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||         ||| | | || ||| |||  |   | |||   ||           ||| ||| |    |  || ||  | | ||  ||| || || || |||||
CTTGATTTAGT-TGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttg--------tttatcatatcaatgttatctctttctgagcattt---------ggaacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411475|gb|EV281286.1|EV281286
EST:     CGGTTTATCATGGGGGATAGTCAGTATCCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCGTGCTTTGACAGCCGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC
EST: gi|9899371|gb|BE608339.1|BE608339
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTC