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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAAGAGGTATGTTGAGATTGGGAGGGTTTCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGATGTCATTGACCAGAACAGAgtaactctcccaccaccacccaagttcttacctttattcacatttacacacaaccatttgcatgctttcttagaattagttcttgctttgttgataatcctaataatattag

Basic information

species Glycine max
transcript GLYMA03G06380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G06380.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 5'ss of exon 2
TTTCAAGAGGTATGTTGAGATTGGGAGGGTTTCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGATGTCATTGACCAGAACAGAgtaactctcccaccaccacccaagttcttacctttattcacatttacacacaaccatttgcatgctttcttagaattagttcttgctttgttgataatcctaataatattag
 ||||||||||  || ||||| ||| ||||  |||   | |||||||||||||| || ||| | ||||||||||||||||||||| | ||||||||||| || | |      |   | |||      | ||| |  ||     | | || |      |    ||      |    | ||||| ||  ||  |  |   |   ||| |     
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATTGTCGATGTCGTCGACCAGAACAGGgtgagttagat-ctgtctccc------tcaccctggttgttgctgatacgcctgtgctgatgtgtggatatgagttcagttcctgagttactcttgggctgcatagt-----

upper sequence: GLYMA03G06380.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
TTTCAAGAGGTATGTTGAGATTGGGAGGGTTTCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGATGTCATTGACCAGAACAGAgtaactctcccaccaccacccaagttcttacctttattcacatttacacacaaccatttgcatgctttcttagaattagttcttgctttgttgataatcctaataatattag
 ||||||||||  || ||||| ||| ||||  |||   | |||||||||||||| || ||| | ||||||||||| || |||||| | ||||||||| | ||||   ||       | |  | |   | | ||   ||  |||||  || |      |    ||  |   ||||| |  | || |   |  |        | |||       
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaact--gtttccatttgtacccgctttataatttggatctatagaaattatactag---tactagctggtgtgata-------

upper sequence: GLYMA03G06380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 2
TTTCAAGAGGTATGTTGAGATTGGGAGGGTTTCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGATGTCATTGACCAGAACAGAgtaactctcccaccaccacccaagttcttacctttattcacattta-cacacaaccatttgcatgctttcttagaattagttcttgctttgt--tgataatcctaataatattag
 ||||||||||  || ||||| ||| | ||  |||   | |||||||||||||| |||||| | ||||||||||| ||||| ||| | ||||||||||| || | ||    |    ||    | ||||  | | |  || | |||    | |      |    || |      |   | ||  | |||  ||  | |||| |             
GTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGgtgagtcaa--aatgtcagatcacttctctcttgtggtctcctttggttcgctttagctgaggtgttgataccggcctggtgttggctgcgtattcataaac-------------