Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGAGGCCGCAGTTCGCGAGGTCGCGAAGCTGCTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttctattcgatttgattctgttaatcattttaattttcgtttttctttttttaattataataatacctattgctgtgtgtttttgaatttgct...
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 5'ss of exon 1
GAAGGAGGCCGCAGTTCGCGAGGTCGCGAAGCTGCTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttctattcgatttgattctgttaatcattttaattttcgtttttctttttttaattataataatacctattgctgtgtgtttttgaatttgct----
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GAAGGAGGCGGCCGTGCGCGAGGTGGCGAAGCTGCTCCCGCTCCCGGAGCTCCTCTCCTCCATTGCCTCCATCAAATCCGACTACCTCGCGCGGCAGCAGgtgatgtgatccctccctcgaaacccgat--tcgcgccaaacgtagcggaa--tttctgaagtgtttggttgatagattcggcgaactctgatagtcatctcca
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G116981_T01 (Zea mays), 5'ss of exon 1
GAAGGAGGCCGCAGTTCGCGAGGTCGCGAAGCTGCTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttctattcgatttgattctgttaatcattttaattttcgtttttctttttttaattataataatacctattgctgtgtgtttttgaatttgct---------
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GAAGGAGGCCGCGGTGCGCGAGGTGGCGAAGCTGCTCCCGCTCCCGGAGCTCCTCTCTTCTATCGCCTCCATTAAATCTGACTACCTCGCGCGGCAGCAGgtgacg---tgatccaccccgatacc--tcacaattcta---ctcgcggcgctgccgctaattgcaacggaatctga-gttgggcaaatccggattctcattttcaatc
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAGGCCGCAGTTCGCGAGGTCGCGAAGCTGCTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttct--attcgatttgattctgttaatcattttaattttcgtttttcttt-ttttaattataataatacctattgctgtgtgtttttgaatttgct
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CAAGGAAGTGGCGGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCGTCAATTAAGGCTGATTACATTACGCGCCAACAGgtgatgcttctttgtccaatttaat--agtcaaa-atttctatttcaatttgggttagtttcaatcacatatgtaggtgagtatgtgtgtgtgtgtgtgtgtgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209707340|gb|BW670619.1|BW670619EST: TTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAG GCCAATGATGCACAGCTTAGTACAATGGTTGCCGAACAG
genomic: TTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttc ... tatttttcagGCCAATGATGCACAGCTTAGTACGATGGTTGCCGAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGAGGCCGCAGTTCGCGAGGTCGCGAAGCTGCTGCCGCTTCCGGAGCTTCTCCAATCGATCTCGTCCATCAAGGCTGATTACATTTCGCGCCAACAGgtttcagttctattcgatttgattctgttaatcattttaattttcgtttttctttttttaattataataatacctattgctgtgtgtttttgaatttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT