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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattgtttatagatattttatttgatttactgtataaataatatgtgcaatttcatgtttagaatatggatctcaagttta...

Basic information

species Glycine max
transcript GLYMA03G02610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatttaa--ttgtttatagat----attttatttgatttactgtataaataatatgtgcaatttcatgtttagaatatg-gatctcaagttta---------------------------------
||||||| ||  |||| ||||| || |||||||||||||| ||||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| ||  ||| ||| || ||     || | | ||       | | |||||  |||   |||| |    |  |  || |  |  ||    | |||  ||  |    || |                                 
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag

upper sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctat-tattttatttaattgtttatagatattttatttgatttactgtataaataatatgtgcaatttcatgtttagaatatggatctcaagttta-
| ||||| ||||| || || |||||| | |||||||| ||  | ||||| |||||  | ||||| || || |||||||||||||||||||| |||||||||| || ||| |   ||  |   | | |  |  |  ||| | ||   ||   ||  || |  | || | ||||| ||||||    | |     ||| ||||| 
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaattt-atgtttcctctgtatga-tcatgtttag

upper sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattgtttatagatat-tttatttgatttactgtataaataat-atgtgcaatttcatgtttagaatatggatctcaagttta
||||||| ||||| || || || ||||||||||||||||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||| ||   |  ||   |||  ||||| ||| | || || | ||     |  | |    |  |  |    ||||||| |||      |  | |||    |   
TGCTTCGGTTTCTAGAGAAACTCTGTGTTGATTCACAGATTTTAGTAGACATATTCATCAATTATGATTGTGATGTCAATTCATCAAACATATTCGAGAGgtatgtcctgtttggttttttttgttgatacaaatattcaattatacaaaagcacttctggttgtaaaaaatttca-gttggtggcaaagctctttgttac-