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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtctattttccttgtcaatgtaatcagttcatcatattttttgtgtttaatttagtatatgcaaatttttttct...

Basic information

species Glycine max
transcript GLYMA03G00920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtctattttccttgtcaatgtaatcagttcatcatattttttgtgtttaatttagtatatgcaaatttttttct--
||      ||| | || |||||||| || ||||||| |||||| || ||||| ||| | |||||  |||| ||||||||||| ||||| || |||||||||||         |   | |  | | |||||  || | |     || |  |  |||  || | |     |  ||   || | | |   |   | || ||    
AGAAGAGGCAGATCAGTCATAATGTGGCCAAGTTCAGATTTGCTCTACCAACCCCTGCTTCTGTGCTGGGGCTTCCAATTGGCCAACATATCAGTTGCAGgttgg-------gggttatatcatatgtcttcttgcttctctcatatcttttgtttctcttttacaaagaattgtgttaaatgttatctcctgttcttgcag

upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157263_T01 (Zea mays), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtctattttccttgtcaatgtaatcagttcatcatattttttgt-gtttaatttagtata--tgcaaatttttttct
||      |||||||| ||||||||||| |||||||  ||||| |||||||||||||| ||||| |||||||||||||| || || || ||||| ||||||||      | |  | |    ||| ||    |               |  |  | |     |||| ||   || | | |  || ||  | | |||  ||    
AGAAGAGGCAGCTGAGTCATAATGTTGCCAAGTTCAAGTTTGCGCTCCCAACACCTACTTCTGTATTGGGTCTTCCAATCGGACAGCATATAAGCTGCAGgtttgggctcttcgt-taccacttttgaaagtgggttcgaaaggcacagccgttactctgaatttctttcagtcttactgtgtctacctcccaatcgttccag

upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G17770.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtctattttccttgtcaat--gtaatcagttcatcatattttttgtgtttaatttagtatatgcaaatttttttct-
|| |    ||||| || || ||||| || ||||||   |||| |||||||||  |||| ||||| ||||||||||| ||||| |||||||| |||||||||||   |   |  |  | ||  |    ||| | |   ||||       |   || | |  |   ||  | |  | | |   |   ||| |||| |   |    
AGAGACATCAGCTTAGTCACAATGTGGCCAAGTTCGTTTTTGAACTCCCAACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcctcgtacttcttattatcctctctgtgttttgttcgccaatcgccactcctgccagttgctagattctga---aacctatccaaaatggctgtga

upper sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCAAAGTTCACATTTGCACTCCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgcctgatcttttgcttgtgtc-tattttccttgtcaatgtaatcagttca--tcatattttttgtgtt-taatttagtatatgcaaatttttttct
||||  ||||||| ||||||||||| |||||||||| |||||  || || || || ||||| || ||||| || |||||||| ||||| |||||||||| || |  |||  |||    ||| || |||| | ||| |  | | |    | || ||  |  || ||| ||||   || | | ||  | | | || |   ||||| 
AGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttggttgag---ttggttctgtcgtgtttgctctatgatcaaactcggtctaaatcctatctttttaattcttagttcttgtttacatagcattttc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301598|gb|FG994782.1|FG994782
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|213587981|gb|DB971456.1|DB971456
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|213617616|gb|DB969328.1|DB969328
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|209728695|gb|BW655402.1|BW655402
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|151407227|gb|EV277042.1|EV277042
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|10236160|gb|BE805048.1|BE805048
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|151394787|gb|EV264658.1|EV264658
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|4285741|gb|AI440947.1|AI440947
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAAGAGGTTATCAAACCATATACTCCTACTA
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAA-GAGGTTATCAAACCATATACTCCTACTA
EST: gi|58021619|gb|CX708360.1|CX708360
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|298183643|gb|HO028856.1|HO028856
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|151401464|gb|EV271278.1|EV271278
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|193418380|gb|FK385180.1|FK385180
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|298174935|gb|HO014852.1|HO014852
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|193327580|gb|FK292971.1|FK292971
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAAACCATATACTCCTACTA
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAA-CCATATACTCCTACTA
EST: gi|151403993|gb|EV273803.1|EV273803
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|207766661|gb|GD738289.1|GD738289
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|298189804|gb|HO038207.1|HO038207
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|13788917|gb|BG651508.1|BG651508
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|37995436|gb|CF807025.1|CF807025
EST:     GGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: GGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|18690778|gb|BM519626.1|BM519626
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|298186113|gb|HO036746.1|HO036746
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|151399348|gb|EV269219.1|EV269219
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAGGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|298178943|gb|HO024678.1|HO024678
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTAC
EST: gi|4285622|gb|AI440930.1|AI440930
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGG-GAAAGAGGTTATCAAACCATATACTCCTACTA
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttcaattgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAA-GAGGTTATCAAACCATATACTCCTACTA