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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgcacgctcggtctttctaaaaaaattgttgacctgtttgtttgttgttagtgattttaataatgtcaattgtgttgttggaagtgcttttagtcgagatattgaattgtaagtttttgtttttttttttttttatttgggtgtggttaaattgggcgtttgttattttcttag

Basic information

species Glycine max
transcript GLYMA03G00470.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00470.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G174757_T01 (Zea mays), 5'ss of exon 2
TCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgta---tacacgcacgctcggtctttctaaaaaaattgttgacctgtttgttt--gttgttagtgat--tttaataatgtcaattgtgttgttggaagtgcttttagtcgagatattgaattgtaagtttttgtttttttttttttttatttgggtgtggttaaattgggcgtttgttattttcttag
 |||||||| |  || || ||  |||| || |||||||| ||  | || || ||  |||| ||    |||||||| ||||||||||| | |||||||||||||   |||  |   | |  || ||  |   |    |  | |||||     |   |   | |   ||   ||||| |||| |  |||    ||       |                                                                                       
CCAAATTGGAGCGATAAAAGAAAATGGTCTATGGATGCCTGTAAACCCAGAGACAAAGAAGACATACGGTTACTGTTTCATTGAGTATAGTACCCCTCAGgtattttacttgttggttgcgttttcttcttag---ttcttacctgcacaatgaagcaatgaacaatggcttaattatgttacctgttcaattcatccctcgc-------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337951|gb|CO981817.1|CO981817
EST:     AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAG                         GAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
genomic: AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgc ... attttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
EST: gi|193389845|gb|FK353610.1|FK353610
EST:     AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAG                         GAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA
genomic: AAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgc ... attttcttagGAAGCTGAACTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCA