1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgaccacattgccttgtttgactctaaattttgatacctcgcgatgatgacttttcttgtcccttgattttattttttaacaaacttggtgtgatcattgcag
species | Glycine max |
transcript | GLYMA02G47460.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAG GGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAATEST: gi|151410342|gb|EV280157.1|EV280157
genomic: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgacca ... atcattgcagGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAAT
EST: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAG GGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAATEST: gi|120530332|gb|EH258465.1|EH258465
genomic: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgacca ... atcattgcagGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAAT
EST: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAG GTTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAAT
genomic: TTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgacca ... atcattgcagGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgaccacattgccttgtttgactctaaattttgatacctcgcgatgatgacttttcttgtcccttgattttattttttaacaaacttggtgtgatcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT