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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGGAGTTATTTCAGGATCTTGCTCCGTTATTGTGGAATTCTCTTGGCACCATGGCAGCACTTTTACAGgtatgcatgctttggttgacttgcattaacattacacatattctttctcacttgcctttctttcttgtcttttatatttatctgaatatccccatactga...

Basic information

species Glycine max
transcript GLYMA02G46250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 4
AAGAGGGAGTTATTTCAGGATCTTGCTCCGTTATTGTGGAATTCTCTTGGCACCATGGCAGCACTTTTACAGgtatgcatgctttggttgacttgcattaacattacacatattctttctcacttgcctttctttcttgtcttttatatttatctgaatatccccatactga---
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AAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGgtatgctctatacagttca-tgacagta-cttgattcagtttcctttttgcttgctatatcatttaatgtgcta-gcttcctttattgtgcttttactgtcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070480|gb|AW099867.1|AW099867
EST:     TTGCTCCGTTATTGTGGAATTCTCTTGGCACCATGGCAGCACTTTTACAG                         GAAATAGTTTCAATTTACCCTGCTATTTCACCTCCAAACCTTACTCCAGCA
genomic: TTGCTCCGTTATTGTGGAATTCTCTTGGCACCATGGCAGCACTTTTACAGgtatgcatgc ... tttctttcagGAAATAGTTTCAATTTACCCTGCTATTTCACCTCCAAACCTTACTCCAGCA