Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATATTAAAGTGTATGCAGCTGTTGTTGAAAAGCCAGGGGACACTTTTCCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcctctctcacttcttttcctattctttttttctgctgcaaatcatagttttgtttttctttatttgaattgcaaattatgatttttgttaatttcaatttttatttgagtag

Basic information

species Glycine max
transcript GLYMA02G44460.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299184|gb|FG990456.1|FG990456
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|308098678|gb|HO760419.1|HO760419
EST:     ACGATGCTGTTTCTTCTCAACTTGCTTCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: ACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|9565730|gb|BE475239.1|BE475239
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|21889907|gb|BQ743120.1|BQ743120
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|192314010|gb|FK010346.1|FK010346
EST:     CTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|192314009|gb|FK010345.1|FK010345
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|254342849|gb|GR859011.1|GR859011
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|19052795|gb|BM731462.1|BM731462
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|7925296|gb|AW831322.1|AW831322
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|41145797|gb|CK606008.1|CK606008
EST:     CTTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|14259721|gb|BG882629.1|BG882629
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|38191164|gb|CF920370.1|CF920370
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|17022325|gb|BM093359.1|BM093359
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298166777|gb|HO010216.1|HO010216
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|33388439|gb|CA851646.1|CA851646
EST:     CCTAATGCTGCCAAGNGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGNGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|18040489|gb|BM308783.1|BM308783
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|151409528|gb|EV279336.1|EV279336
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|9563902|gb|BE473411.1|BE473411
EST:     TTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: TTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|16519545|gb|BI347330.1|BI347330
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|4306961|gb|AI443979.1|AI443979
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298194998|gb|HO043526.1|HO043526
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298190179|gb|HO032300.1|HO032300
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGACTCAGTGGCGCCGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|17963362|gb|BM270112.1|BM270112
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|14259428|gb|BG882336.1|BG882336
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|41145960|gb|CK606171.1|CK606171
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298169772|gb|HO021132.1|HO021132
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|192296967|gb|FG990283.1|FG990283
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|12689248|gb|BG155584.1|BG155584
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|6845830|gb|AW348120.1|AW348120
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCNTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298198832|gb|HO042195.1|HO042195
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298169624|gb|HO020984.1|HO020984
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAATGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|192332130|gb|FK024590.1|FK024590
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
EST: gi|298190147|gb|HO032268.1|HO032268
EST:     CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAG                         CTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC
genomic: CCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcct ... atttgagtagCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATATTAAAGTGTATGCAGCTGTTGTTGAAAAGCCAGGGGACACTTTTCCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGgtttgttcctctctcacttcttttcctattctttttttctgctgcaaatcatagttttgtttttctttatttgaattgcaaattatgatttttgttaatttcaatttttatttgagtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG