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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTGTACCACATTTGTAGCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTCGAACATTTTCGGCAGGTATTGCAAAAGgttggttatgctctcgctttctcttgattaaaatttgtctattggtaactatgttaattgtgcaatagtaagaagtctttgttgtattataaattgttca...

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 2
GGTTTCTGTACCACATTTGTAGCTACTGAAGAAGACTTCTGCGCGTCAAATATCAAAAACCGCTTCACCTGTCGAACATTTTCGGCAGGTATTGCAAAAGgttggttatgctctcgctttctcttgattaaaatttgtctattggtaactatgttaattgtgcaatagtaag-aagtctttgttgtattataaattgttca----
                      ||| ||||||| |||||||| |  ||||||||||||||||| || ||||| ||||| ||||  ||   |||  || |||| ||||||  | ||    | |  |  ||   |||  ||  || |||  |   | | |||   | |  |    || |  || |  ||  |    ||  | |    
----------------------CTATTGAAGAAAACTTCTGCTCAGCAAATATCAAAAACCGCATCTCCTGTGGAACAATTTCATCATTCATTAGAACAGgtcggttattat-tcatactataatattttttatt-atccttttgtattt---tcatttgcatactcatgtccaaattcttctcataaaaagttttagtaattga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814676|gb|BI786951.1|BI786951
EST:     TATCAAAAACCGCTTCACCTGTCGAACATTTTCGGCAGGTATTGCAAAAG                         GGTTCTGATGTGTCAATTAAGGAGCTAGACACCCTTTTGTCACTTCTTGCC
genomic: TATCAAAAACCGCTTCACCTGTCGAACATTTTCGGCAGGTATTGCAAAAGgttggttatg ... tttggtacagGGTTCTGATGTGTCAATTAAGGAGCTAGACACCCTTTTGTCACTTCTTGCC