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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag

Basic information

species Glycine max
transcript GLYMA02G41980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag
|| || |||||||| ||  | ||||| |||||||||||||| ||||| ||||| ||||| |  ||||| || ||||| || || || || ||||||||||||| |  ||                   | ||||  | | || | |   | |||        |||||||  |   |  |  ||||  | ||| |||||| |    | |                                
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtctta-----------------aaaaaagacgaagctatcttgtgtttg--------ttaaaatgcttgaaccaaagtgttgaatttgatgtttcttcttttag-------------------------------

upper sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag
|| |||||| | ||| |  ||||||| ||||| |||||||| ||||| ||||| || || |  ||||||||||| || ||||||||||| ||||| || ||| || ||||| | |  |||    | | ||    ||       ||| |   ||    | | |||    |||  || ||    ||  | |  |    |||  || ||    | ||   | |                    
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcat----tctaaggctttg-------tttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattattccatgtcatctatag------------------

upper sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S58_274V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag
|| |||||||||||| || ||||||| ||||||||||||||    || ||||| || ||||  || ||||| || || ||||| ||||| ||| | |  |||     |      ||  |   ||  ||  ||     |   | |||     |||  ||      |  ||||||       | ||| ||| |||||||    | | |  ||||   |                        
GAGAGGTTTGCAAAACTATTGCTTGGTGAAGATATGTCAGGTGGGGGCAAAGGGGTTTGCACAGCGTTGGCTATATCGAATGCAATCACAAATTTGTCAGgtgaaaatcaaagctattac-cgtaatggcaatagattgtttgttttcatgttga-aagcaagaatgattttc-----gcgttgtaaatattaatgtc--cagatttttgttcacag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193385685|gb|FK350277.1|FK350277
EST:     AGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTG                         CAACTGTGTTTGGGCAATTGTGGAGACTAGAACCTATACCTTGTGAAAAGA
genomic: AGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttc ... caacatgtagCAACTGTGTTTGGGCAATTGTGGAGACTAGAACCTATACCTTGTGAAAAGA