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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTCGCTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttggtttttttacaatactcattcagcttctctagtaaaaaggttaaacttatgatgctttactggacactgacattataacttttatgtag

Basic information

species Glycine max
transcript GLYMA02G41890.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41890.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTCGCTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttggtttttttacaatactcattcagcttctctagtaaaaaggttaaacttatgatgctttactggacactgacattataacttttatgtag
||| |||||||||||||| || || |  |||||||| |||||||| ||  | || ||||||||||| ||||| || |||||  |||||||||| |||||||| |   ||||  ||||||   | ||| ||   ||  | || | |   | | |||  |   || |||   | |     |                    
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgtta---ttggcatttttagttttctc-ttgttctattttactca--tgctgaaaactgaaattcttcttttggtctag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963355|gb|BM270105.1|BM270105
EST:     CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG                         GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: gi|6913619|gb|AW395149.1|AW395149
EST:     CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG                         GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: gi|14991799|gb|BI317472.1|BI317472
EST:     CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG                         GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
EST: gi|207772753|gb|GD743947.1|GD743947
EST:     CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAG                         GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA
genomic: CTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttg ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACGATA