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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACATGATGGGCATTCAAGAACAATAGTTGGAATTCAAGTCAAATATCAACAGTCTGGAATTCCACAATACAGTCTCCTGGTTATGGATCCTGGTCATgtaatatatttgcatgctaatgtctattttcttgttatttagatggatgtgagtaattctgtacttgcatatcatatgagttcttcttgaccaattaaaa...

Basic information

species Glycine max
transcript GLYMA02G38520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0098g00580.t01 (Vitis vinifera), 5'ss of exon 4
TCAACATGATGGGCATTCAAGAACAATAGTTGGAATTCAAGTCAAATATCAACAGTCTGGAATTCCACAATACAGTCTCCTGGTTATGGATCCTGGTCATgtaatatatttgcatgctaatgtctattttcttgttatttagatggatgtgagtaattctgtacttgcat--atcatatgagttcttcttgaccaattaaaa--
||| |||||||| ||||| ||||| || |||||||||||||||||| |||| |    ||| || |  |||||||  ||  |  || |||| |||  ||||||||  ||| || ||    || ||  ||  |     ||||   | |   |  | | || |||  ||  |   |  | |  |||   | || |  |      |  
TCAGCATGATGGCCATTCGAGAACCATCGTTGGAATTCAAGTCAAACATCAGCTCAATGGGATGCATCAATACAACCTATTAATTTTGGACCCTACTCATgtaa-gtatctgtatatgcatttcctttcacaacccattt---tagcaatccgcatttttgtttttataggaaaaagacaagtgtatattaagaagcacctaac