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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAGTCTTCTCAAGCAAGCAGTGTTGCTGTTGCTCTTGCCTCTTCTGAAGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatttgtggtttagatttgtttgatatgtataaaagcttgtgatttgtagttatgcttgacaatgtgtgggcttgaaatgtggcag

Basic information

species Glycine max
transcript GLYMA02G36530.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496872|gb|EH225039.1|EH225039
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
EST: gi|192315342|gb|FK009634.1|FK009634
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
EST: gi|209722815|gb|BW682888.1|BW682888
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACCAATCAGAAGCAAAGA
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
EST: gi|7640052|gb|AW734361.1|AW734361
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATCATATGAAGAT
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGATTATTTGAAGAT
EST: gi|298198780|gb|HO042143.1|HO042143
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGAT
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGAT
EST: gi|120496798|gb|EH224965.1|EH224965
EST:     AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTG                         GGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA
genomic: AGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGgtattgaatt ... aatgtggcagGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGA