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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatatttccctgttcactctgtagatttatccttatggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa...

Basic information

species Glycine max
transcript GLYMA02G35990.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G027378_T01 (Zea mays), 5'ss of exon 2
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatat-----------ttccctgttcactctgtagatttatccttatggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa
 || || || ||||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||||| || |||||||| || || |||||||| || ||||| |  |             ||  | |     ||||   |||||  | ||  | || |   ||  || |  |  ||  | |  |||    |||||    | |         
AGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacacaatctcatcctctttatctttcctgtgcctttatt-taattaaggt-taggcacgcacaactgccaactactagtactctgctgcaattata---------

upper sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G071010_T01 (Zea mays), 5'ss of exon 2
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaa--atatttccctgttcactctgtagatt---tatccttatggatgtgtgtccaatcat----agttatcagttgcatgtaagaggctgcccccaaaaaggttaaa
 || || || ||||| ||||| ||||| |||||||||||||||||||  |||||||| |||||||| || |||||||| || || |||||||| || ||||| |  | |    |   | | || | ||  |    |  | ||||  |  |  |   |  ||     |  |  ||  | |  |||    |||||  | |           
AGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacacaatctcatcctctttatatttcccgtgcctttatttaattaaggttagacacgcacaactgccaactactagtactttgctgcaactacc---------

upper sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 5'ss of exon 2
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatatttccctg--------ttcactctgtagatttatccttatggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa
 ||||| || ||||||||||| || || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || || || |||||||||| |       |             || | || |||  |   | | | |  ||| | ||| ||    |||| |   || || |  | |   |   |          
AGAAAAGGGTATTGGAGATGGTACTGTCAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACCATCATCGGTCCTCATAATgtaagtgcccttttaaagaacaacatgctttatatattctttgatcttgttacgtgacaaat-atcagcatcactcttatatatgttgatatactacatgt-------

upper sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatatttccctgttcactctgtagatttatcctt---atggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa---
 || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||| | | ||||||||||||||| ||||| |||||||| ||     | || | |      | || ||      | |||||   ||    || ||  | | |    |||   | | ||   ||  ||  ||       | | |    | |     
AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-----tccgtccagagctaaaatttacatttcgcgtgaattagcgactc-ccatcccttttaggcacaattagtagaaaatatcaagactaataagttca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040006|gb|BM308300.1|BM308300
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254349094|gb|GR860366.1|GR860366
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|4307444|gb|AI444048.1|AI444048
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|21675327|gb|BQ627688.1|BQ627688
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|22932167|gb|BU549306.1|BU549306
EST:     TGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: TGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|27426798|gb|CA938318.1|CA938318
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|19348365|gb|BM892897.1|BM892897
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|58018614|gb|CX705356.1|CX705356
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254316764|gb|GR828301.1|GR828301
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|192315990|gb|FK007109.1|FK007109
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|27425018|gb|CA936538.1|CA936538
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|12688734|gb|BG155070.1|BG155070
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254327956|gb|GR834921.1|GR834921
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|15813071|gb|BI785346.1|BI785346
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|13480511|gb|BG509854.1|BG509854
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|21994159|gb|BQ785687.1|BQ785687
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|14258514|gb|BG881422.1|BG881422
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|4396099|gb|AI495096.1|AI495096
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|58024425|gb|CX711166.1|CX711166
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|31460525|gb|CD402493.1|CD402493
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|12497027|gb|BG047360.1|BG047360
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|6455149|gb|AW185832.1|AW185832
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|16341891|gb|BI967486.1|BI967486
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|15286664|gb|BI470555.1|BI470555
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254349093|gb|GR860365.1|GR860365
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|15286444|gb|BI470343.1|BI470343
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|6341954|gb|AW164778.1|AW164778
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|21286090|gb|BQ473961.1|BQ473961
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|15814040|gb|BI786315.1|BI786315
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|10231472|gb|BE800360.1|BE800360
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254329680|gb|GR839233.1|GR839233
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254343063|gb|GR859225.1|GR859225
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|23725959|gb|BU760954.1|BU760954
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|193437905|gb|FK399194.1|FK399194
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|12773143|gb|BG238070.1|BG238070
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|254327955|gb|GR834920.1|GR834920
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|192327019|gb|FK015201.1|FK015201
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAA
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAA
EST: gi|254316765|gb|GR828302.1|GR828302
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|192315989|gb|FK007108.1|FK007108
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|9258943|gb|BE347090.1|BE347090
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|58018289|gb|CX705031.1|CX705031
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
EST: gi|213611874|gb|DB958912.1|DB958912
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGTTTTGTGATAAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatatttccctgttcactctgtagatttatccttatggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc