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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTGTTGTCAAGGAACACTTCTCAAAGAAGTACAGCCATCCAACTTTGGATTCTAAACTGACACTCAAGCACTTAAACGCGgtcagatttaaaaaaattgtattctttccccaatattaaatcattgtctttgtttcaccaattttttggag

Basic information

species Glycine max
transcript GLYMA02G34690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34690.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
----------------AGATGTGTTGTCAAGGAACACTTCTCAAAGAAGTACAGCCATCCAACTTTGGATTCTAAACTGACACTCAAGCACTTAAACGCGgtcagatttaaaaaa----------attgtattctttccccaatat--taaatcattgtctttgtttcac--caattttttggag---
                || |||||||||||||| | ||| |||||||||||| | |||||| ||||||| || ||||| || |||||||  || || ||||| || ||    |            |   | || ||||   |||||  | |  || || | |  || ||   |       | ||    
AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggggttcttacctttttgtttctgtaatataatgacacaatgccctacttccaaaacggcacccttgactag