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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt...

Basic information

species Glycine max
transcript GLYMA02G33340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagc-taagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt
||||||||  ||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |||||||| ||||| |||||||| || || ||||| ||||||| | |  | | |   |       | ||| ||   ||  || || |||  |   |     | |     |    |  ||      || |  ||   | 
AAGTTTCTGAGACAACCACATTTCATTGTCTGGGATAACAGTGATCTTGTTACACATGAGGTGATGGGTGGTTTGAAGAATGTCTACGCCATCGGTGCTGgtaagaatattttaaatacgttctgtttgttttccaaaatattaactatctttataacagtaaaaataattaactaatcctactaacaaacgaatggagt-

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g58740.1 (Oryza sativa), 5'ss of exon 3
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccat-atcttttatatgttataatggttgcgatt---
|| ||| |  | || || ||||||||||| ||||| || ||||| ||  | || ||||| |||||||| || ||||||||||| ||||| |||||||| |||||  ||||| ||  |   | | |     ||| |           | |  | |  |   | || ||   | || |||   |||   ||   ||||  ||    
AAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGgtaat-ttctatttcctctcttg-attgtttttgctatcttctgtaatcacggtagagcatatactgttgtgatatttagcatggggtat--gttggaatgcac

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 3
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaa----gattctaattagttaatagc--acaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt
|||||| |  | || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| |||||     | |    |   ||  || |  ||||  ||       || | | | | |  |      |||      | |  |   | |  |   |||| ||      
AAGTTTTTGAGGCAGCCACATTTCATTGTCTGGGACAACAGTGATCTTGTCACCCATGAGGTGATGGGTGGCCTGAAGAATGTCTATGCAATCGGTGCTGgtaatactaacttctgtctttttttaactgacaatattattgtacaataggcatcctactacttgatgttgaagaaaacataacaaacatgtaaatgttt------

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 3
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt--
|||||| |  | || || ||||||||||| ||||| |||||||| ||  |||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||  ||   ||| ||   |  |||    |       |    | ||   ||      |   |||  |  ||| ||    ||   |  ||||    ||    
AAGTTTTTGAGGCAGCCTCATTTTATTGTGTGGGATAACAGTGATCTCATCACTCATGAAGTCATGGGTGGCTTAAAAAATGTCTATGCTATTGGTGCTGgtaa--tttctatttgtctttttcactgtttcctgttttcttgattacactggagagctacatatatcattatattaagaataaaaagatgggctagaaacc

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G173195_T01 (Zea mays), 5'ss of exon 2
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt-------
|| ||  |  | ||||| ||||||||||| |||||||| ||||| ||  | || ||||| |||||||| ||||| ||||| || ||||| ||||| || |||||| |  |  | |   |  |  |     ||| ||  |      |  ||| | | | |   ||| |  |||  |  |  ||  |   ||  |||   ||       
AATTTCTTGAGGCAACCTCATTTTATTGTATGGGACAATAGTGATCTCATTACTCATGAAGTCATGGGCGGCTTAAAAAACGTATATGCCATTGGGGCCGgtaagttatt--tgatccagaaaaatggaatttccatttgc----tctcttttcccagttcttat-gagatacttggtcaatcattgcatatttgatgtttcatcaa

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 2
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctt-tacagctaagaagtaacttg----ttctaatctgtattgccatatcttttatatgtta-taatggttgcgatt---------------------------------------------------------------------------------------------
||||||||  | ||||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||| ||||| || |||||| |  || ||  |||  |    ||  |  || ||  |  |     ||||    |||  || ||     || | ||   || |  | |  |||| |   | |                                                                                              
AAGTTTCTGAGGCAACCCCATTTCATCGTATGGGACAACAGTGACCTTGTCACTCATGAAGTTATGGGTGGCTTAAAGAATGTGTATGCCATTGGAGCCGgtaagttgttatttctttatgatggtaatataatagagggatcattgtgcttgaagtttcatatatgagcatccttgtcagataaacttcagcaatgatctggttctcattttgacctactaggagaagaaaaccaaaatttaaaaatgttgttattggatttaatcaagagtctcacattttcactttgattttccag

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S323_18V6.2 (Physcomitrella patens), 5'ss of exon 4
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaag--aagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt--------------------------------------------------------------------------------------------------
|||||||| || || |||||||||||||| ||||||||   |||| || |||| |||||||||||||| ||  | || ||||| || || |||||||| ||| || | ||||   |   |   | |  | ||| |  ||  |  || |  ||  ||||| | | || ||    |     || ||   | | |   |   ||                                                                                                   
AAGTTTCTGCGCCAGCCACATTTTATTGTGTGGGACAATCCTGACATTATCACACATGAGGTCATGGGAGGTCTTAAGAATGTGTACGCCATTGGTGCTGgtgagctactaacagg---actcctcgtgtttttctactgtgcaaattttctcattctagttt-tactgatggactcgctaaataggagatttcgtttaatataaagaatgaacagaggatggtagtgccaaacgtggaattcggagtgttcaggaaatggtgggcctgtgctgactaagataagttatggcttgtgcag

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S114_190V6.1 (Physcomitrella patens), 5'ss of exon 4
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaat-tagttaatagcacaagctttaca---gctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt
|||||||| || || ||||| |||||||| ||||| ||   |||| ||||||| |||||||||||||||||  | || ||||| || || |||||||| ||| ||   ||       |     |    ||  ||  |     | ||||   | |  |   |   | | |     || | |||| | |||| |||   ||  || 
AAGTTTCTGCGCCAGCCACACTTTATTGTGTGGGATAATCCTGACATTGTCACACATGAGGTCATGGGTGGTCTTAAGAATGTGTACGCCATTGGTGCCGgtgagccactgtcacgatcctctgtgttagtcttctatgcattgagaatgtaatcatctaatgttttctcattctagcctttaga-gtta-aatcactg-aat-

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25021 (Selaginella moellendorffii), 5'ss of exon 2
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt
   || ||  | || || |||||| | || ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||||| ||||||||||| ||| ||  |  || |  ||| |  |      |||  |      ||| ||  ||||||||  | | | ||    ||  | | |                   
CGTTTCCTGAGGCAGCCGCATTTTGTGGTGTGGGACAACAGCGACCTCGTTACTCATGAAGTCATGGGAGGCTTGAAGAACGTCTACGCAATTGGTGCCGgttagtgttcaagttcttagtttcttg---tttggaaaacgaaagaaa--tgttctaaaatctttggc----tcgctcacag------------------

upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15326 (Selaginella moellendorffii), 5'ss of exon 2
AAGTTTCTACGACAACCACATTTTATTGTCTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGgtaagattctaattagttaatagcacaagctttacagctaagaagtaacttgttctaatctgtattgccatatcttttatatgttataatggttgcgatt
   || ||  | || || |||||| | || ||||||||||| ||||| || || ||||| |||||||| |||||||| || ||||| ||||||||||| ||| ||  |  || |  ||| |  |      |||  |      ||| ||  ||||||||  | | | |     ||  | | |                   
CGTTTCCTGAGGCAGCCGCATTTTGTGGTGTGGGACAACAGCGACCTCGTTACTCATGAAGTCATGGGAGGCTTGAAGAACGTCTACGCAATTGGTGCCGgttagtcttcaagttcttagtttcttg---tttggaaaacgaaagaaa--tgttctaaaatctttggt----tcgctcacag------------------