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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctgcttgtgattttagtttaaaaacttcatttcattacttggctcttcaaaattttttaacaagaatggtgtttaagtagctag...

Basic information

species Glycine max
transcript GLYMA02G26620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 3
CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctgcttgtgattttagtttaaaaacttcatttcattacttggctcttcaaaattttttaacaagaatggtgtttaa-gtagctag----
||  || || ||  | ||||| ||| | ||| | ||| | |||||||||||||| || |||||| ||||||||| | | || ||||| || ||||||||||||      | | ||  |  |  || ||  |||||||     | ||||   |  ||   | || | || ||     ||   ||  |||| |   |    ||    
CAGCTATTGTCCAACTTGGGCACTTACATGGGCTTATAGAAGGCAAAATTTGTTGCGTGAAATTATTGGTTACCATGCTGATATTATCTGCCTTCAGGAGgtatgaatgc-tattgtttttcatgtttgaagtttaaggctctgatttgcatctttaattgttaataaatt----gcacttattatgttcagcatgatgagttta

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G58580.1 (Arabidopsis thaliana), 5'ss of exon 2
CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctgcttgtgattttagtttaaaaacttcatttcattacttggctcttcaaaattttttaacaagaatggtgtttaagtagctag---
|| |||||| ||| | ||||||||||| |||||||| || || || ||||||||| |||| |||||||| ||  |  | ||  |  |||| || || || |||  |    ||     ||    || |  |  ||||||     ||||| | | ||      |  |     || |||   |     | |||   || || |   
CAGTTACTGTCCTCCTTGGGCTCTTTCATGGCCATACCGAAGACAGAATTTGTTAAGGGAGATTGTTGGATATAGAGCCGATGTAGTTTGCCTGCAAGAAgtatgt---tattcgtatggacttggtaatgatttaaag----cattttaattctgaaaaatcta----cttctaatgtgttcttttttttgttatctggcag

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 5'ss of exon 2
CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctg---cttgtgattttagtttaaaaac-ttcatttcattacttggctcttcaaaattttttaacaagaatggtgtttaagtagctag
|| |||||||||  ||||||||||  ||||| |||| || || || ||||||||||||||||||||    |||||| |||| ||  ||||||| || ||||||  | || || ||  ||   |  ||  |  |   ||  |||| ||    |   || ||      | || |  | |  |  |   | || ||| |      ||
CAGTTACTGCCCCACATGGGCTCTCGCTTGGACATACCGTAGACAGAATTTGTTACGGGAAATTGTCAAGTACCGTGCAGATATAGTTTGTCTACAAGAGgtatgttaa-atatttatggcacaagttgtactgacttggaaacgtttcaattgctagttaatggataaatacctctccaatattttcgtttttcatcttgcag

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 2
CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctgcttgtgattttagtttaaaaact-tcatttcattacttggctcttcaaaattttttaacaagaatggtgtttaagtagctag----
|| ||||||||| |||||||||||||||||||| || |||| ||| ||||| ||||||||||| ||||| || ||| | |||||| | ||||| || ||||||  |||   |   | |     | ||| |  || ||   || |  | |   ||      | || | | |||      |||  |      |   | |  |     
CAGTTACTGCCCCTCATGGGCTCTTTCTTGGCCTTACCGCAAGCAGAATTTATTACGGGAAATAGTTGGATATCGTGCTGACATTGTCTGTCTGCAAGAGgtatctgaggttacactt-----taattgttattcaatttctcttgtgttgctagcaatgtattgagactttcaggttaagcttctgaccttttttgacatgtgt

upper sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S335_77V6.3 (Physcomitrella patens), 5'ss of exon 3
CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaacatgttcctgcttgtgattttagtttaaaaacttcatttcattacttg--gctcttcaaaattttttaacaagaatggtgtttaagtagctag--
||  || |||||| |||||||  |  | ||| ||||||| ||||| ||| |||||||||| ||||| |  |||||  |||||||| | |||||||||||||||  |  |  |     ||  || || || ||  |||| ||      || |    ||    | |    ||    |  |     || || |  ||  |  |    
CAGCTATTGCCCTCCATGGGCATTGGCATGGACATATCGAAGGCAGAATCTGTTACGGGAGATTGTGGCGTACCGAGCAGACATTCTGTGTCTTCAGGAGgtattttgaact----ttgaatgggagttgagagtaaagaccaacggtcctggtctgttattttctggaaggagtgtatttccattgtctgaaaaaaattgatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446355|gb|CA953478.1|CA953478
EST:     TGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAG                         GTTCAAAGCGATCATTATGACGAANNNNNNNCTCCCGAATTAGACAAACAT
genomic: TGTTACGGGAAATTGTTGGTTACCGTCCAGACATTATTTGTCTTCAGGAGgtacatgaac ... ttccctccagGTTCAAAGCGATCATTATGACGAATTTTTTTCTCCCGAATTAGACAAACAT