Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCTCTTGCGTTACTGCTTGGATAGTGCACCTGGTCTTGAGACATACCCTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctcactgatagatccttaattttgtttgacgatgttttaatttttttcttcttcttcaacggttaattttaaaagcattagtctctaatctgatcttggcattgttcttaagataacctctttttgtgtgtggatcgatgcag
Basic information
species | Glycine max |
transcript | GLYMA02G19430.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G19430.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G097802_T04 (Zea mays), 5'ss of exon 3
CTTGCTCTTGCGTTACTGCTTGGATAGTGCACCTGGTCTTGAGACATACCCTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctcactgatagatccttaattttgtttgacgatgttttaatttttttcttcttcttcaacggttaattttaaaagcattagtctctaatctgatcttggcattgttcttaagataacctctttttgtgtgtggatcgatgcag
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CATACTTCTGCGCCGTTGCCTGGACAGCAAGGATGGGCTCGAGACTTACCCTGACATCGGACATGCTGCCTTTGGTACTGCTGGCCGTATCATCATCTCGgcaagtattttctgca-----ctagcaacgctcacca--gttgtcagttttgtattattcat--atcatgcagtgtaatggagtgtggttttttttttttgctaactct----------------------------------------
upper sequence: GLYMA02G19430.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G097802_T01 (Zea mays), 5'ss of exon 3
CTTGCTCTTGCGTTACTGCTTGGATAGTGCACCTGGTCTTGAGACATACCCTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctcactgatagatccttaattttgtttgacgatgttttaatttttttcttcttcttcaacggttaattttaaaagcattagtctctaatctgatcttggcattgttcttaagataacctctttttgtgtgtggatcgatgcag
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CATACTTCTGCGCCGTTGCCTGGACAGCAAGGATGGGCTCGAGACTTACCCTGACATCGGACATGCTGCCTTTGGTACTGCTGGCCGTATCATCATCTCGgcaagtattttctgca-----ctagcaacgctcacca--gttgtcagttttgtattattcat--atcatgcagtgtaatggagtgtggttttttttttttgctaactcttctgcttttgtatgcctttgcaacctgcag----------
upper sequence: GLYMA02G19430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 5
CTTGCTCTTGCGTTACTGCTTGGATAGTGCACCTGGTCTTGAGACATACCCTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctcactgatagatccttaattttgtttgacgatgtt-ttaatttttttcttcttcttcaacggttaattttaaaagcattagtct-ctaatctgatcttggcattgttcttaagataacctctttttgtgtgtggatcgatgcag
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GATTCTCTTGCGTTACTGCTTGGATAGTGCTCCAGGGCTTGAAACTTACCCAGACATTGGCCAAGCTGCATTTGGTACTACAGGCCGATTTGCCATCTCGgtgagtctccttattctatcctt---tttatctccccttgtcatcaactttttgagtaacaaagaatactacacagcaagtatggaaaacaattaattaggtt------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295123|gb|FG986842.1|FG986842EST: CTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCT ATAATACTATACATGGAATTATAT
genomic: CTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctca ... atcgatgcagATAATACTATACATGGAATTATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCTCTTGCGTTACTGCTTGGATAGTGCACCTGGTCTTGAGACATACCCTGACATCGGCCAAGCAGCTTTTGGTACTACTGGACGTGTCATCATCTCTgtaagtctcactgatagatccttaattttgtttgacgatgttttaatttttttcttcttcttcaacggttaattttaaaagcattagtctctaatctgatcttggcattgttcttaagataacctctttttgtgtgtggatcgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT