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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGgtactgactgtgtgatatattttgtcatcatttgtaacaccaagctctaagctcttgcaagtagtgagtttcatactaactatctttttgttgtttttttcttttcaatcaattttcag

Basic information

species Glycine max
transcript GLYMA02G17070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17070.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G03100.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGgtactgactgtgtgatatattttgtcatcatttgtaacaccaagctctaagctcttgcaagtag--tgagtttcata-ctaactatctttttgttgtttttttcttttcaatcaattttcag
 || ||||| ||||| ||||||||||||   ||||||||||||||||| || ||||| || || ||||||||  | || || || ||   |||  | |||||| ||            | || || |||| || |      ||  |      | |||  || ||  ||| ||| ||| ||  || |  || ||| |                          
GGCGGAATCGATGCAATGTTCTTATGATGAGAAAGGAAACAGTGTCCCAACGATTCTATTACTTATGCAGGAGAGACTCTATTCTCAACAAGGTCTTAAGgtaatggg----------aattggtaatcaattttgttgagaaatt------tgttgagaggagactgaatttgatatcttgcttttgttgtgtag--------------------------

upper sequence: GLYMA02G17070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 2
AGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGgtactgactgtgtgat----atattttgtcatcatt-tgtaacaccaagctctaagct--cttgcaagtagtgagtttcatactaactatctttttgttgttttttt-------cttttcaatcaattttcag
 || ||||| ||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||||||  |  |||| || || | ||| |||||||||   ||| |  |       || | | |||  |   ||| |    ||     |||     ||  ||  | |  ||| | |  | |   | |||  |   |||| ||        |||| | |   |||  ||
TGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTATATTCTCAAGAAGGGTTAAAGgtatgaacttttaggctacagtagtatatcagaaagatgtgatgggaaaggagaagaaaatttctaaaaatttggttgctttatcaggctatttcagcaattttcttactgacttttttgagtggttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194653|gb|HO043125.1|HO043125
EST:     CTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAG                         GCTGAATGTATATTTCGTATTAACCCTGAAAATAGTCAAGAGGGGCATGTG
genomic: CTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGgtactgactg ... caattttcagGCTGAAGGTATATTTCGTATTAACCCTGAAAATAGTCAAGAGGAGCATGTG