Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTGGGCCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAGgtgtatcttttatggctactagattttacccttattacctaaattttagaattgttttggtgtaatgttggttgaaaggtttaacgagatatgtttttttgttag

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g08400.1 (Oryza sativa), 5'ss of exon 3
GTGATTGGGCCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAGgtgtatcttttatggctactagattttacccttattacctaaattttagaattgttttggtgtaatgttggttgaaaggtttaacgagatatgtttttttgttag
|| |||||||| ||||| ||||||||||||||| | || ||||| |||||||| ||  | ||  |  |||||  |   |   |  || |   |  |       ||   | |      || ||  ||    ||     ||| |  |  || |   |                    
GTTATTGGGCCATATCGATCTGGAAAATCTTTTCTTCTCAATCAGCTTCTCTCCCTAACATGCAATAAAGgtacaa--tgagttcctgccttacatacataccatgctccaggaaagaggatacttggaatgatggattgataaattggctctgcag------------------

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGATTGGGCCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAGgtgtatcttttatggc-tactagattttacccttattacctaaattttagaatt--gttttggtgtaatgttggttgaaaggtttaacgagatatgtttttttgttag
|||||||| || ||||||||||||||||| ||| | || ||||| ||||| |||||||||||||| |||||||  |||| | |    |||| |   |   |  | |||| ||  ||||   | |     |||   |    |   || |||  || | |                    
GTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTTCTTTCTCTTTCTTGTTATGAAGgtgcttcttatctcatatactcgggctctgcggt-ttacttactttttgctactcaacattgacttccaatattttcaaa--ttcatcag------------------

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 3
GTGATTGGGCCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAGgtgtatcttttatggctacta-gattttacccttattacctaaattttagaattgttttggtgtaatgt-tggttg--aaaggtttaacgagatatgttt--ttttgttag--------------------------------
|| ||||| || || || |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | | ||||   ||   | || | |   |   ||   |    | |     |  |||  || ||||  || |||  || | || |||   |  || ||    |   |                                  
GTAATTGGTCCATACCGCTCTGGAAAATCTTTTTTGCTCAATCAACTTCTCTCCCTTTCTTGTTATGAAGgtgcagcatttactactgtcaagactcttttcccgttcggttttctcttcttcttctttcatggaatgggtgattgtgaatgtttcaacataacttggttggcctcagtgattttctaactgaactttaatattcttttgcag