1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttcatgaatatgatccatgtggaagtgatttaccgattttgcttttgattgaaatgaatcatgacggtttagacctaaacgaatctggttgcca...
species | Glycine max |
transcript | GLYMA02G15540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|208229771|gb|GE026094.1|GE026094
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|13181092|gb|BG352432.1|BG352432
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCCCTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|193661901|gb|FK602687.1|FK602687
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGA-TGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298163443|gb|HO012176.1|HO012176
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|10255966|gb|BE823732.1|BE823732
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCANNGAAGACTCCAATGATGCCACTACCAAG ATTACGTNNNNNGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|17519610|gb|BM188652.1|BM188652
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298167322|gb|HO010761.1|HO010761
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAACTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298199552|gb|HO042915.1|HO042915
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCTATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|193624115|gb|FK576053.1|FK576053
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGEST: gi|192332058|gb|FK026338.1|FK026338
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTG
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTGCGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAGCTTGTTTTCEST: gi|151397361|gb|EV267234.1|EV267234
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192297819|gb|FG988317.1|FG988317
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|193639828|gb|FK587105.1|FK587105
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|151394659|gb|EV264530.1|EV264530
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192330489|gb|FK022662.1|FK022662
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCTACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298194670|gb|HO043142.1|HO043142
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298192558|gb|HO036640.1|HO036640
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|15203957|gb|BI426734.1|BI426734
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|208103487|gb|GD903114.1|GD903114
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298176175|gb|HO015580.1|HO015580
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|120492950|gb|EH221117.1|EH221117
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|151411054|gb|EV280865.1|EV280865
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298199406|gb|HO042769.1|HO042769
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCCTTGCTGGAAGTCTGCATGAGGAAACTTEST: gi|10234082|gb|BE802970.1|BE802970
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTT
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTATGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|7147142|gb|AW509064.1|AW509064
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298174830|gb|HO017939.1|HO017939
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|151408591|gb|EV278399.1|EV278399
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298182792|gb|HO031527.1|HO031527
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCGATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298166885|gb|HO010324.1|HO010324
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192331291|gb|FK021002.1|FK021002
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGAGTTGCACCGAAGACTCCAATGATGCCACCACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192332059|gb|FK026339.1|FK026339
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTGCGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAGCTTGTTTTCEST: gi|209696839|gb|BW680461.1|BW680461
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298197039|gb|HO041726.1|HO041726
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACCCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|193662354|gb|FK606950.1|FK606950
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|120493042|gb|EH221209.1|EH221209
genomic: CTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAG ATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttca ... taacttttagATTACGTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGGAAACTTGTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGgtatggttcatgaatatgatccatgtggaagtgatttaccgattttgcttttgattgaaatgaatcatgacggtttagacctaaacgaatctggttgcca
- - - - - - - - - - - - - - - CGAAGA