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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctctagctactcttgtgctccaaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttcttttaaatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag

Basic information

species Glycine max
transcript GLYMA02G14860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 2
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctctagctactcttgtgctccaaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttcttttaaatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag
||| || |||||||| ||||||||||| || ||||||||||| ||||| || || ||||||||||| || || ||| |||| || ||||| ||||| ||||| ||   |  || |     |||         |||||  |  | || |   |    || |   |  |   || || | |  | |             |||| |||| | ||   | |||     ||                                                      
TTGTACCGCTGGTGGTGCTTATATTCCGGCAATGGCTGATGAGAGTGTAATAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttctctgcc----tgcc-------attttgattattcattttatg----ttttgcatggtgagatcttgagaactatc------------caatgttttcaaatcgcctatgcaccaata-----------------------------------------------------

upper sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 2
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagc---tctagctactcttgtgctccaaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttcttttaaatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag
||||||||||||||| || ||||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||| |||| || ||||| ||||| ||||| ||    |   |  ||  || || |     || || |  |||||||  | | | | | |  ||  |||   || |||||  |    || |       |||||||                                                                             
TTGCACTGCTGGTGGGGCATATATTCCTGCAATGGCGGATGAGAGTGTAATAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatattctggaaccattttgttt----attttctaaatgataaaattttggtgtctaaat-ctctaatatattaaagcaccggtcgtcccg-cgtcaatat-----------------------------------------------------------------------------

upper sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctctagctactcttgtgctc-caaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttcttttaaatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag
 |||||||||||||| || || |||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||||| ||||| |  | |  | | |    | ||| |    | | |    |  || |||   |   |||||      |  ||   ||||  |     ||||| ||                                                                                      
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag-----------------------------------------------------------------------------------

upper sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 3
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctctagctactcttgtgctccaaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttctttta-aatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag
||| ||||||||||| |||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| ||| |||| ||||| || ||||| |||||||| || || |  | | |    || ||||| ||  |    |     |||| |   |   | || ||| || ||     ||||||| |  | ||||  || |                                                                              
TTGTACTGCTGGTGGTGCTTATATACCTGCAATGGCGGATGAAAGTGTTATGGTCAAAGGAAATGGTACCATATTTCTAGCTGGGCCTCCACTTGTGAAGgttagttccagatcttttggcatgcctaaatgcttcatgcagtgg---ctggattcataattctttttgcatgttttg-catgtttcctgaagaattataaaaa-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270320|gb|BM886576.1|BM886576
EST:     TGGTCAAGGGAAATGGTACCANNNNNNNAGCAGGGCCACCTCTTGTTAAG                         GCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTG
genomic: TGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctcta ... gattttttagGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTG
EST: gi|17023783|gb|BM094817.1|BM094817
EST:     TGGTCAAGGGAAATGGTACCANNNNNNNAGCAGGGCCACCTCTTGTTAAG                         GCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTG
genomic: TGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctcta ... gattttttagGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTG