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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTTTCTCTGGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTATGTCCCTAACAATAACCTTTATTTTCATCTACATGgtaaaactacatctgagtgataatagattgtttcagtttattttgattgactttgattgtattaactgatattgtaatttgcag

Basic information

species Glycine max
transcript GLYMA02G14310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G458548_T02 (Zea mays), 5'ss of exon 2
CGCCATTTGGTTTCTCTGGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTATGTCCCTAACAATAACCTTTATTTTCATCTACATGgtaaaactacatctgagtgataatagattgtttcagtttattttgattgactttgattgtattaactgat----attgtaatttgcag
||||||||||||||||| |||||||||||||||    |   |  |||  ||||||| || |||| |||  |||| || |  ||  ||| |||||| || ||||    || | |    |  ||||   |||    |||  |||   ||   ||   | |  |  || |||     | || ||| | |||
CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatg-ttatagcctctttctaatcctttgcaagagt--attcccatcttctgccagtacaaaaattgaactgaactgcaatct-cag

upper sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
CGCCATTTGGTTTCTCTGGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTATGTCCCTAACAATAACCTTTATTTTCATCTACATGgtaaaactacatctgagtgataatagattgttt-cagtttattttgattgact-ttgattgtattaactgata-ttgtaatttgcag
||||||||||| || || ||||| |||||||||   || |||  ||| || || |||||||||||||| |||||||||| ||||||||| ||||| ||||||||  ||       ||||||||            ||||| |  | || ||    ||||| | |    || |  |||||||||| ||
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgt-----agtgataagcttccaagaatagtttgtggtaatggataactgattatgt--gttgctccttgtaatttgtag