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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATGGGATAAAAGGTGCTGAATCGATTGCTGACCATATGTACCGCATGGCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacattgaaattctcttcatctcttgttatatgaattcttatgatgctcgtctctgttttcgtgttggttctttggtttgttttattatgagatta...

Basic information

species Glycine max
transcript GLYMA02G14300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02430.t01 (Vitis vinifera), 5'ss of exon 2
ATCATGGGATAAAAGGTGCTGAATCGATTGCTGACCATATGTACCGCATGGCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacattgaaattctcttcatctcttgttatatgaattcttatgatgctcgtctctgttttcgtgttggttctttggtttgttttattatgagatta
|| |||||||||||||| | || || |||||||| || |||||||||||||| || ||||| ||||||||||| ||  |||  ||  ||||  | ||||||||  || |       |   |||   |||||  | |   || |||      |  ||    | |||  | || |  ||  | |||||| | ||| |  |  
ATAATGGGATAAAAGGTCCGGAGTCTATTGCTGATCACATGTACCGCATGGCATTGATGGCGTTGATTGCTGGTGACCTTCATGGTGTGAACAGGGAAAGgttggacttgtttgaacgtatcactgcttgtgctttttgtttttaaacatattttcaggttattctcggtgatatttctgcttgtttaagtattaactag

upper sequence: GLYMA02G14300.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S33_22V6.1 (Physcomitrella patens), 5'ss of exon 2
ATCATGGGATAAAAGGTGCTGAATCGATTGCTGACCATATGTACCGCATGGCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacattgaaattctcttcatctcttgttatatgaattcttatgatgctcgtctctgttttcgtgttggttctttggtttgttttattatgagatta---------------------------------
|||| ||  | || | | | ||||| ||||||||||||||||||||||||||  | |||||  | ||  | || ||| | |||||  ||||   ||| ||||    |||   |  || |||| |   |  ||  |||    |||  || ||  ||   |    | ||    ||    | |    ||||||| | | |||                                  
ATCACGGCGTGAAGGATTCGGAATCTATTGCTGACCATATGTACCGCATGGCAGTCATGGCTATTATCTCAGGAGATTTACCAGGTGTGAACAAAGATAGgtga-gcatc--atctcacttcgt---tgattgaatgtgccctttcga-gcaagttattcaaatagtaggtgtctacttgagatttttattgtaaaattttgcttggtgttcatcaccttcatggcaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593744|gb|DB957864.1|DB957864
EST:     GCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAG                         ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
genomic: GCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacatt ... tgctgtacagATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
EST: gi|62531354|gb|DN828683.1|DN828683
EST:     TTAATGGCATTGATTGCTGGAGATGTTCCAGGATTGAATCGAGAAAG                         ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
genomic: TTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacatt ... tgctgtacagATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
EST: gi|61996841|gb|DN676662.1|DN676662
EST:     GCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAG                         ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
genomic: GCTTTAATGGCATTGATTGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacatt ... tgctgtacagATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
EST: gi|51344946|gb|CO985679.1|CO985679
EST:     TGCTGGCGATGTTCCAGGATTGAATCGAGAAAG                         ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
genomic: TGCTGGCGATGTTCCAGGATTGAATCGAGAAAGgtttcacatt ... tgctgtacagATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
EST: gi|12689507|gb|BG155843.1|BG155843
EST:     GTTCCAGGATTGAATCGAGAAAG                         ATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG
genomic: GTTCCAGGATTGAATCGAGAAAGgtttcacatt ... tgctgtacagATGTATTAAAATAGCACTCGTGCATGATATTGCAGAAG