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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatcatctggccttttcttatgtgatgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagcatgattaaacataattct...

Basic information

species Glycine max
transcript GLYMA02G14110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatca--tctggccttttcttatgtgatgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagcatgattaaacataattct
|| |||||||| ||| | ||||| ||||||||| |  |||| || || ||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||||  | | |  ||    |  |||  ||   ||  | | |||        |     | | |  |         |    ||  | | | ||| || |     
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa--

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaa--atcatcatctggccttttcttatgtgatgc----ttttatcattc-ttactatgg----tgcattatcaggctgcaggctg-catagcatgattaaacataattct
||||| ||||| ||||||||||| ||  |||| ||  |||| |||||||||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||||  ||  |||||| |     ||  ||| |        |  ||| |  | ||  | ||     || | ||||  ||||| | |   | |    |  | |||| ||     
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag----

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 1
GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatcatct-----ggccttttcttatgtgatgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagcatgattaaacataattct
|| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| || |||||||||||||| |  | |       ||| || ||   ||| ||| ||| ||    |  |   |    || | |      ||| | || |  |  |||     ||     
GTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGgtaaatcttgttttctctcatcctgttttttcttgaagctgttaacacaagtcttgatggaatttttaacaggataggtttcaaataagtatttgtttta-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718631|gb|BW674744.1|BW674744
EST:     AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATG                         ATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAA
genomic: AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatc ... ctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACGATTTAA