Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaattaaacttaaatcatattaccagaattattgcaaattcttataaatatcaaaaaatttgatatacaattgattatt...
Basic information
species | Glycine max |
transcript | GLYMA02G12830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G12830.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g00720.t01 (Vitis vinifera), 5'ss of exon 2
GGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaattaaacttaaatcatattaccagaattattgcaaattcttataaatatcaaaaaatttgatatacaattgattatt--
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GCTTTGCGTTTATGACCAAGAGTGAAGTTGATCATCTTGAAGACGGCTATCGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct-ccttta-atttaatttagcttctgtagctcaacaactgttacagtcaatttcagcaattcaaccaatttcttgcatgaagtttgtgggtct
upper sequence: GLYMA02G12830.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S244_77V6.1 (Physcomitrella patens), 5'ss of exon 1
GGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaattaaacttaaatcatattaccagaattattgcaa-attcttataaatatcaaaaaatttgatatacaattgattatt---
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GCTATGCGATCAAGACCAGGGCAGACACCGATGTATTGGATGATGGTTACAAGTGGCGCAAGTATGGACAGAAGGCAGTTAAAAACAGTCCTCATCCCAGgtacttcac-actactggtctaatttctgtgcacgcaaccttggcagtgctattgctctgatccactgcacatgcatacagtgga---accatcaagtctctcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21256035|gb|BQ452923.1|BQ452923EST: AGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAG GAGCTACTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGA
genomic: AGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagct ... cattttgcagGAGCTACTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaattaaacttaaatcatattaccagaattattgcaaattcttataaatatcaaaaaatttgatatacaattgattatt
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