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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCAGGCTGATAATCACAGAAACGTTGTTCCTCCATCTTCCCGCTCATCTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAATgtaagatttagtattatttcttgtgtttctataggaagtcactaaatgcttcttgaatatctgtattgagtcaatgcgtggtttattataaatttataac...

Basic information

species Glycine max
transcript GLYMA02G12560.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390236|gb|CA853443.1|CA853443
EST:     CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAAT                         GGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
genomic: CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAATgtaagattta ... tttgattcagGGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
EST: gi|26060247|gb|CA803161.1|CA803161
EST:     CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAAT                         GGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
genomic: CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAATgtaagattta ... tttgattcagGGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
EST: gi|298172536|gb|HO019576.1|HO019576
EST:     CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAAT                         GGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
genomic: CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAATgtaagattta ... tttgattcagGGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
EST: gi|7924384|gb|AW830410.1|AW830410
EST:     CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAAT                         GGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT
genomic: CTTCAAACTATGTTGCTCTCCGCTTCTGTGACTTCAATTTGGACTCCAATgtaagattta ... tttgattcagGGACATGGGTTTCACATGAAAGCAAGCAACTGTCGTTACATGGTTGTATAT