1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAGGAGCCGCTGATCCAGATGGCAGAGTGCCGCATCTGCCAGGAGGAGGATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaattttgtgtgtttgatgattttgatttgttaaaaaatttatgaggtttggttttgtcaggtatttgttagttatgatgatgatttctgcgtt...
species | Glycine max |
transcript | GLYMA02G11960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGCGTTTCCAACTTGGAGA-CCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|20811753|gb|BQ296231.1|BQ296231
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAEST: gi|15814866|gb|BI787141.1|BI787141
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|16346362|gb|BI971957.1|BI971957
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|23052679|gb|BU577171.1|BU577171
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|4305531|gb|AI443775.1|AI443775
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGG-GTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCEST: gi|193369703|gb|FK338533.1|FK338533
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGC
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTEST: gi|23057292|gb|BU577966.1|BU577966
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATT
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|18039590|gb|BM307884.1|BM307884
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|23053063|gb|BU577554.1|BU577554
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGEST: gi|193448074|gb|FK411469.1|FK411469
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAG
EST: TGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGTCGGCAGTCTTAAG TATGCTCACAGAAAGEST: gi|9564988|gb|BE474497.1|BE474497
genomic: TGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAG-CGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAG
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAEST: gi|14258749|gb|BG881657.1|BG881657
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
EST: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAG TATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
genomic: ATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaat ... ttttgtgcagTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAGCCGCTGATCCAGATGGCAGAGTGCCGCATCTGCCAGGAGGAGGATGGCGTTTCCAACTTGGAGACCCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaaaattttgtgtgtttgatgattttgatttgttaaaaaatttatgaggtttggttttgtcaggtatttgttagttatgatgatgatttctgcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA