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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCCAGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgcatggaatatatacaagtgctttttctaaatagttaatgtatttgcacctgatttggttgagtgtacattagaaacaatagcatgccacttg...

Basic information

species Glycine max
transcript GLYMA02G11320.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11320.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 5'ss of exon 2
GCGGTCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCCAGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgcatggaatatatacaagtgctttt-tctaaatagt-taatgtatttgcacctgatttggttgagtgtacattagaaacaatagcatgccacttg
 || || |||||||| |||||||||||||| ||||| |||||| | ||||| |||||||| ||||| ||||| ||| | |||||||| ||||| ||||||||||   |||  | || ||| | | | ||| | | ||| |||  |   |  |||| ||     ||| |   ||      |||                    
TCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAGgtattcagca--ggat-tatgctaatacttctatgtaagtagcctgccgattttgtactctgattgttcttgttgttggtag--------------------

upper sequence: GLYMA02G11320.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 2
GCGGTCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCCAGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtat-catgcatggaatatatacaagtgctttttctaaatagttaatgt-atttgcacctgatttggttgagtgtacattagaaacaatagca--tgccacttg
  |||| || || ||||||||| | || |||||||| || ||| ||||||| |||||||| |||||||| || || || || ||||| | ||||||||||||||  ||  |||  |   ||   | ||  |  ||| |||   || | | |  || |  ||||| |  | |    |  |    ||  |    |  ||  |||| 
AAGGTCATTCGGTACAGAAGGACGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGTGACAAAGTTTATGAATACATCCTATTTCGTGGAAGTGACATCAAGgtatatatatatgtgaataatttgaatgtctcctctcaatgcctattttgacctgga--tgatt-gaataatctcaagtcgtgaattaccatagttgaaactt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058869|gb|CA801783.1|CA801783
EST:     CCAGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC
genomic: CCAGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC