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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcacgcattgaatatatacaagtgctttttctaaatagttaatgtatttgtacctgatttggttgagtgtacattagaaacaatagcatgccacttg...

Basic information

species Glycine max
transcript GLYMA02G11300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11300.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 5'ss of exon 2
GCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcacgcattgaatatatacaagtgctttt-tctaaatagt-taatgtatttgtacctgatttggttgagtgtacattagaaacaatagcatgccacttg
 ||||| |||||||| |||||||||||||| ||||| |||||| | |||||| ||||||| ||||| ||||| ||| | |||||||| ||||| ||||||||||   |||  | || ||| | | | ||| | | ||| |||  |   |  |||||||     ||| |   ||      |||                    
TCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAGgtattcagca--ggat-tatgctaatacttctatgtaagtagcctgccgattttgtactctgattgttcttgttgttggtag--------------------

upper sequence: GLYMA02G11300.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 2
GCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtat-cacgcat-tgaatatatacaagtgctttttctaaatagttaatgtatttgtacctgatttggttgagtgtacattagaaacaatagca--tgccacttg
  | || || || ||||||||| | || |||||||| || ||| |||||||| ||||||| |||||||| || || || || ||||| | ||||||||||||||  |   || |||||| ||   | ||  |  ||| |||   || | |     |   ||||| |  | |    |  |    ||  |    |  ||  |||| 
AAGGTCATTCGGTACAGAAGGACGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGTGACAAAGTTTATGAATACATCCTATTTCGTGGAAGTGACATCAAGgtatatatatatgtgaata-atttgaatgtctcctctcaatgcctattttgacc-tggatgatt-gaataatctcaagtcgtgaattaccatagttgaaactt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502262|gb|AW203635.1|AW203635
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcacgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC
EST: gi|209697514|gb|BW670015.1|BW670015
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcacgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC